Pairwise Alignments

Query, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas putida KT2440

Subject, 319 a.a., 23S rRNA pseudouridine(955,2504,2580) synthase from Escherichia coli BL21

 Score =  348 bits (892), Expect = e-100
 Identities = 186/321 (57%), Positives = 238/321 (74%), Gaps = 12/321 (3%)

Query: 1   MTTNTPPTSGVQLIEVAPELAGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPE 60
           M T TP    V+++ +  + AGQRIDNFL T LKGVPK+++YRILRKGEVRVNK R+KPE
Sbjct: 1   MKTETP---SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE 57

Query: 61  YKIQAGDIVRVPPVRLPERDEPAPVAQGLLQRLEA---AIVYEDKALIVMNKPAGIAVHG 117
           YK++AGD VR+PPVR+ ER+E A      LQ++ A    I+YED  ++V+NKP+G AVHG
Sbjct: 58  YKLEAGDEVRIPPVRVAEREEEAVSPH--LQKVAALADVILYEDDHILVLNKPSGTAVHG 115

Query: 118 GSGLSFGVIEALRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKR 177
           GSGLSFGVIE LR LRP+A+ LELVHRLDRDTSG+L++AKKRS LR LH  LR  G+ K 
Sbjct: 116 GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175

Query: 178 YMALVRGHWPTSKKQVNAPLLKSNLRSGERMVEVNEEGKEALTLFRVLRRFGDFATIVEA 237
           Y+ALVRG W +  K V APLLK+ L+SGER+V V++EGK + T F+V  R+  FAT+V  
Sbjct: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FATLVRC 234

Query: 238 RPITGRTHQIRVHTLHAGHMIAGDSKYGDEDFSREIRELGG--KRLFLHAYALTVPLPDG 295
            P+TGRTHQIRVHT +AGH IA D +YGD +F R++ E G    RLFLHA AL    P  
Sbjct: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294

Query: 296 GE-LKLEAPVDEVWAKTVERL 315
           GE +++EAP+DE   + +++L
Sbjct: 295 GEVMRIEAPMDEGLKRCLQKL 315