Pairwise Alignments

Query, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

Subject, 839 a.a., fimbrial assembly protein from Pseudomonas simiae WCS417

 Score =  273 bits (697), Expect = 4e-77
 Identities = 227/787 (28%), Positives = 355/787 (45%), Gaps = 67/787 (8%)

Query: 59  LSMLTSDQGLAPGRYRVEVQVNLEPAGQHELDFQPGPDGEL---QPCLPARLLGEWGMRL 115
           LS  +    + PG Y + +++N     +  + F P PD +L   Q CL   ++ ++G++ 
Sbjct: 23  LSQFSRSGFILPGTYPMVIKLNTNTLPEQSVAFYP-PDNDLKGSQACLTPSIVEQFGLKK 81

Query: 116 DALANPED-QASACLDLLTVVPGAQIVFTPTELHLAISIPQISMRRNTANQVDPSRWDSG 174
           + +      +   CLD  ++ PG + V       L +++PQ  +   + N   P+RWD G
Sbjct: 82  EKMTQLSWWKGGQCLDFHSL-PGLEAVGDLASASLNVNVPQAYLEYTSINWDPPARWDEG 140

Query: 175 INAAFINYQASTLNGRNRSSGRYTSNDLYLNS--GINLGEWRLRSTQSWR------QGSQ 226
           I+   ++Y  +  +   R  G  T N++  N   G N G WRLR+    R       G+Q
Sbjct: 141 ISGLMVDYNMTAQSNYQREEG--TRNNVSGNGTVGANAGAWRLRADWQGRFDGGKTDGNQ 198

Query: 227 GKTEWTRAQTYAQRDIPGTLANLTIGETFTDREVFRSVPISGVRVASDMGMLADNQRGYA 286
            + EW+R   YA R IP   A L +GE +   ++F S   +G  + SD   L  N RGYA
Sbjct: 199 -RMEWSRY--YAYRAIPALRAQLVLGEDYLYSDLFDSFRFTGASLKSDESQLPPNLRGYA 255

Query: 287 PIIRGVAQSRAKVEIWQHGYPIYSTYVSAGPYAIDDLSTAGSGELEVVVTEADGQVRRFI 346
           P + GVA++ A+V I Q G  +Y T V+AGP+ I DL+ A +G L+V + E DG V  F 
Sbjct: 256 PEVVGVAKTNARVIISQQGRILYETVVAAGPFRIQDLNDAVTGSLDVKIEEQDGSVHTFQ 315

Query: 347 QPYSTMSNLLRPGVWRYSATVGRYNPSSDL---ETPLLWQGTLAVGSYWDTTVYGGLMAS 403
              + +  L RPG  RY    GR  PS+ L   +      G  + G     +++GG M  
Sbjct: 316 VDTAGVPYLTRPGQVRYKVAAGR--PSNLLYGDDGDPFASGEFSWGVSNGWSLFGGGMGD 373

Query: 404 EFYRAGNLGFSKDLGHLGAVAFDVTQASSAIDNAHEREVQGSSYALKYAKAFTT-QTNLR 462
             YRA ++G  +DL   GAV+ D TQ+S+ +      E+ G SY L+Y+K+F    +++ 
Sbjct: 374 NNYRALSVGIGRDLLAFGAVSVDATQSSATLSG---EELSGKSYRLQYSKSFDEYDSHVS 430

Query: 463 FAGYRYSTQGYRDFDEVVRQR------------------SQDTTFSGSRRSRLEASVHQS 504
           FAGYR+S + Y    E +  R                   +     GS+ +       Q 
Sbjct: 431 FAGYRFSEKNYLSMSEYLDARHYGLYDQLGSGGEYGEGGERRKPIGGSKAAYTATFNKQF 490

Query: 505 LGRTSSLTLTLSQQDYWRSNATQR------QYQFNFNTQHRGVGYNLFASQSLTDRYGND 558
               +S  L+ ++Q YW    TQR      +Y    + ++     NL  S+    R   D
Sbjct: 491 RDLGASFYLSYNKQTYWNRPDTQRWNLALSRYFSVGSVKNINASLNLHRSEDYNTR---D 547

Query: 559 RQFGLSVTVPLHFGHRANATFDLQHNANGYSQRATLSGSDSARALSYSTSLSRDEHARKT 618
               LSV+VPL  G     T  +  + NG       S     R  SY  S   D     +
Sbjct: 548 NGMTLSVSVPL--GRTGTLTTSVDRDRNGIDFSTRYSDRLDERN-SYQVSAGDD-----S 599

Query: 619 AALSLGHQAPYASVS-AGYTEADNYRSLSLNASGAVLLHADG--LEFGRYLGDTAALIEV 675
            +  L H    A V  +  TE   Y S+SL+A G   L   G  L     +G T  +++ 
Sbjct: 600 VSGYLSHTGELADVDLSASTEGSRYSSVSLSARGGATLTPQGGALHRAGTMGGTRLMVDT 659

Query: 676 PGVANVGLQN-ATGTRTNSRGYALLPYLQPYRTNSVVLETDRLDPDVEIDNGIAQVVPRQ 734
            GVA+V ++     TRTN+ G A++  +  Y+  S  ++ + L  +VE    + Q+   +
Sbjct: 660 DGVADVPVRGYGVSTRTNTFGKAVISDIGSYQRTSASVDLENLPTNVEATQSVTQLTLTE 719

Query: 735 GAVVKHRFEARRVSRLVLTLHDTQGQPLPFGAQVLAENGTQLGMVGQAGLVMLTNPSQEQ 794
           GA+   + E    ++ +  L    G   PFGA V        G++   G V L+      
Sbjct: 720 GAIGYRKLEVIAGAKAMAVLRLPDGSSPPFGALVKNIKQQDTGVLNDGGSVYLSGIQAGG 779

Query: 795 PLQVSWG 801
            + VSWG
Sbjct: 780 QMTVSWG 786