Pairwise Alignments

Query, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

Subject, 918 a.a., fimbria/pilus outer membrane usher protein from Paraburkholderia sabiae LMG 24235

 Score =  358 bits (920), Expect = e-103
 Identities = 249/786 (31%), Positives = 383/786 (48%), Gaps = 38/786 (4%)

Query: 55  SAWSLSMLTSDQGLA--PGRYRVEVQVNLEPAGQHELDFQP--GPDGELQPCLPARLLGE 110
           SA ++ +   D+G A  PG YR  + VN    G  +++ +   G     QP     LL  
Sbjct: 119 SAATVDISRFDKGNAALPGHYRAALYVNGVWIGVTDVNLRETGGQKRAAQPVFDRDLLTR 178

Query: 111 WGM-----------RLDALANPEDQASACLDLLTVVPGAQIVFTPTELHLAISIPQISMR 159
            G+           +LDA AN    A     L  ++P A   F   E  L +S+PQ  M 
Sbjct: 179 VGVDLTRLPETARAKLDAAANGGSTAL----LPELIPQATATFDMGEQRLDVSVPQAMMS 234

Query: 160 RNTANQVDPSRWDSGINAAFINYQASTLNGRNRSSGRYTSNDLYLNSGINLGEWRLRSTQ 219
           RN    VDP  WD G+ AA + Y A+  +  N +    T   L L +G NLG WR R   
Sbjct: 235 RNARGWVDPKFWDDGVPAATLQYNANVYH-TNGAGLATTQGYLGLTAGANLGPWRFRYNG 293

Query: 220 SWRQGSQGKTEWTRAQTYAQRDIPGTLANLTIGETFTDREVFRSVPISGVRVASDMGMLA 279
           +    +   T     QTY QR      + LT+G+++TD  +F S+ + GV++A+D  M  
Sbjct: 294 NVTSATGTGTHVQSMQTYLQRSFEPIKSQLTLGDSYTDGTIFDSIGVRGVQLATDDRMYP 353

Query: 280 DNQRGYAPIIRGVAQSRAKVEIWQHGYPIYSTYVSAGPYAIDDLSTAG-SGELEVVVTEA 338
           ++QRGYAP +RG+A S AKVE+ Q+G  IY+T V+ G + I+DL   G  G+L+VVVTEA
Sbjct: 354 ESQRGYAPTVRGIANSNAKVEVKQNGNIIYTTTVAPGAFEINDLYPTGYGGDLDVVVTEA 413

Query: 339 DGQVRRFIQPYSTMSNLLRPGVWRYSATVGRYNPSSDLETPLLWQGTLAVGSYWDTTVYG 398
           DG       PY+   N LR G WRY+   G+Y  +S    P +++  +  G     T+YG
Sbjct: 414 DGSQHVSKVPYAAPVNALREGRWRYNVAAGQYRNTSAHNHPFVFEAGVQRGVNNFVTLYG 473

Query: 399 GLMASEFYRAGNLGFSKDLGHLGAVAFDVTQASSAIDNAHEREVQGSSYALKYAKAFT-T 457
           G+ A+E Y +G LG + D   +GA   D+TQA+S+  N   R   G S  + Y++ F  T
Sbjct: 474 GVAAAEGYLSGALGAAIDT-PVGAFGLDITQANSSFRNMPGR--SGQSLRISYSRLFAPT 530

Query: 458 QTNLRFAGYRYSTQGYRDFDEVVRQRSQ-----DTTFSGSRRSRLEASVHQSLGRTSSLT 512
            TNL  A YRYST G+ D  + + QR         T +G ++ RL+ +++Q+LG   S+ 
Sbjct: 531 NTNLTLAAYRYSTSGFLDLPDAMNQRDLAQRGIGNTNTGVQKGRLQLTLNQNLGTWGSVY 590

Query: 513 LTLSQQDYWRSNATQRQYQFNFNTQHRGVGYNLFASQSLTDRYGN-DRQFGLSVTVPLHF 571
            +   Q+YW  +     Y   +NT  R VG  + AS+ L       D +  L++++PL  
Sbjct: 591 ASGFTQNYWNKSNRDTSYSVGYNTNFRRVGVGVSASRELDVNSARWDNRVMLNLSIPLDI 650

Query: 572 GHR-ANATFDLQHNA--NGYSQRATLSGSDSA-RALSYSTSLSRDEHARKTAAL--SLGH 625
           G + AN      H++  N    + T +G+  A   LSY  +   D  +    ++  + G+
Sbjct: 651 GSKVANTMTSFMHDSRDNSTQIQETFTGAAGADNELSYGVTAGYDSGSTNGGSINANAGY 710

Query: 626 QAPYASVSAGYTEADNYRSLSLNASGAVLLHADGLEFGRYLGDTAALIEVPGVANVGLQN 685
            + Y  +      ++ Y       SG V+ +  G+      GDT A++E    A   +  
Sbjct: 711 LSRYTQLRGNAGYSNGYTQAGGGMSGTVVAYPGGVALTPQTGDTFAIVEAKDAAGARVAT 770

Query: 686 ATGTRTNSRGYALLPYLQPYRTNSVVLETDRLDPDVEIDNGIAQVVPRQGAVVKHRFEA- 744
           A G R +  G+A++  ++PY  N++ ++T  L   VE+ +      P  GAVV+ +F+  
Sbjct: 771 APGVRVDGFGHAVVAGMEPYSLNTIEIDTKGLPMGVELKSTEQHFAPTAGAVVRVKFDTE 830

Query: 745 RRVSRLVLTLHDTQGQPLPFGAQVLAENGTQLGMVGQAGLVMLTNPSQEQPLQVSWGEQP 804
            R   +V+ L    G  +PFGA VL + G  +G + Q    M  + +    L V WG   
Sbjct: 831 NRGQAVVMRLRRPNGDTVPFGADVLDDKGNNVGTISQGSRAMFYSNAAVGDLTVKWGAGI 890

Query: 805 NAGCQV 810
              C V
Sbjct: 891 GQSCTV 896