Pairwise Alignments

Query, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

Subject, 866 a.a., predicted outer membrane usher protein (NCBI) from Escherichia coli BW25113

 Score =  427 bits (1098), Expect = e-123
 Identities = 276/857 (32%), Positives = 425/857 (49%), Gaps = 62/857 (7%)

Query: 23  GSSTLLSAPYS-QADSGFQSGFLRQVPGQPQAASAWSLSMLTSDQGLAPGRYRVEVQVNL 81
           G    +SA ++ QA++ F   F +  P          LS     Q + PG YRV++ +N 
Sbjct: 22  GLVVFVSAAFNAQAETWFDPAFFKDDPSMVA-----DLSRFEKGQKITPGVYRVDIVLNQ 76

Query: 82  EPAGQHELDF-QPGPDGELQPCLPARLLGEWGMRLDAL-ANPEDQASACLDLLTVVPGAQ 139
                  ++F +  P+  +  CL    L   G+  DA  A  +    AC+ L  ++P A 
Sbjct: 77  TIVDTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDAS 136

Query: 140 IVFTPTELHLAISIPQISMRRNTANQVDPSRWDSGINAAFINYQASTLNGRNRSSGRYTS 199
           + F   +L L IS+PQI+++ N    V P RWD GINA  + Y  S  N  + SS    S
Sbjct: 137 VTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIH-SSADSDS 195

Query: 200 NDLY---LNSGINLGEWRLRSTQSWRQGSQGKTEWTRAQTYAQRDIPGTLANLTIGETFT 256
            D Y   LNSG+NLG WRLR+  +W + S    EW    +Y QR +      LT+G+ +T
Sbjct: 196 GDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRAVIPLKGELTVGDDYT 255

Query: 257 DREVFRSVPISGVRVASDMGMLADNQRGYAPIIRGVAQSRAKVEIWQHGYPIYSTYVSAG 316
             + F SV   GV++ASD  ML D+ +G+AP++RG+A+S A++ I Q+GY IY TYVS G
Sbjct: 256 AGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPG 315

Query: 317 PYAIDDL-STAGSGELEVVVTEADGQVRRFIQPYSTMSNLLRPGVWRYSATVGRYNP-SS 374
            + I DL ST+ SG+L V + EADG V  +  P+S++  L R G  +Y+ T+ +Y   S+
Sbjct: 316 AFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSN 375

Query: 375 DLETPLLWQGTLAVGSYWDTTVYGGLMASEFYRAGNLGFSKDLGHLGAVAFDVTQASSAI 434
           + +     Q TL  G  W TT YGG   +E+YRA   G   +LG  GA++FD TQA S +
Sbjct: 376 EQQESKFAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTL 435

Query: 435 DNAHEREVQGSSYALKYAKAFT-TQTNLRFAGYRYSTQGYRDFDEVVRQRSQDTTFSG-- 491
             A + E +G SY   YAK      TN +  GYRYST G+    + + +      F+   
Sbjct: 436 --ADQSEHKGQSYRFLYAKTLNHLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFNDGD 493

Query: 492 ---------------SRRSRLEASVHQSLGRTSSLTLTLSQQDYWRSNATQRQYQFNFNT 536
                          ++R +L+ ++ Q LG   S  L+ SQQ YW ++   R  QF +NT
Sbjct: 494 DEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNT 553

Query: 537 QHR----GVGYNLFASQSLTDRYGNDRQFGLSVTVPLH-FGHRANATFDLQHNANGYSQR 591
           Q +    G+ +N   S+   D    D+ F L+ ++PL+    R+N ++  + N    +  
Sbjct: 554 QIKDLSLGISWNYSKSRGQPDA---DQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSN 610

Query: 592 ATLSGSDSARA-------------LSYSTSLS-RDEHARKTAALSLGHQAPYASVSAGYT 637
            ++                     LSYS       E      + S+ ++  +A    GY 
Sbjct: 611 TSIDNEGHTTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYN 670

Query: 638 EADNYRSLSLN--ASGAVLLHADGLEFGRYLGDTAALIEVPGVANVGLQNATGTRTNSRG 695
            +DN     LN   SG+++ H+ G+  G+ LG+T  LI  PG  N  + N+TG +T+ RG
Sbjct: 671 YSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRG 730

Query: 696 YALLPYLQPYRTNSVVLETDRLDPDVEIDNGIAQVVPRQGAVVKHRFEARRVSRLVLTLH 755
           Y ++PY   YR N + L+   L  +V+++N +  VVP +GA+V   F A   +R VL   
Sbjct: 731 YTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGAR-VLMKT 789

Query: 756 DTQGQPLPFGAQVLAENGTQL--GMVGQAGLVMLTNPSQEQPLQVSWGEQPNAGCQVHLD 813
             QG PL FGA +   +G Q   G++   G + +     +  + V WGE P+  C ++ +
Sbjct: 790 SKQGIPLRFGA-IATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYE 848

Query: 814 ELDAPVVDGYRQQTLTC 830
             +  +     +    C
Sbjct: 849 LTEQQINSAITRMDAIC 865