Pairwise Alignments

Query, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  970 bits (2508), Expect = 0.0
 Identities = 501/559 (89%), Positives = 534/559 (95%), Gaps = 2/559 (0%)

Query: 1   MTQETGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF 60
           MTQETGGFAA +LNPNI+AAV ATGYEEPSAIQQQSIPII+AG DMIGQAQTGTGKTAAF
Sbjct: 1   MTQETGGFAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKTAAF 60

Query: 61  ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR 120
           ALPIL+ ID +KREPQALILAPTRELALQVATAFETYAKQMPGV VVAVYGGAPMGPQL+
Sbjct: 61  ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK 120

Query: 121 AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAT 180
           AIRNGAQIVVATPGRLCDHLRRDEKVLSTV +LVLDEADEMLKLGFMDDLEVIF A+P T
Sbjct: 121 AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT 180

Query: 181 RQTVLFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLL 240
           RQTVLFSATLP SIR+IAERHLR+P+HVKIQTKTQTVTAIEQAHL+VHADQK  AVL LL
Sbjct: 181 RQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL 240

Query: 241 EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV 300
           EVE+FDALI FVRTKQATLDLA+ALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
Sbjct: 241 EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV 300

Query: 301 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI 360
           ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGR+GRALLLVTPRERRMLQVI
Sbjct: 301 ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI 360

Query: 361 ERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTTDLGCSARAL 420
           ERVTGQKVAE RLP+AQAVLDARIKKLT+SL+PLVA+AE+THG+L DRLT D+GC+ RAL
Sbjct: 361 ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL 420

Query: 421 ASALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAPLPLAE 480
           A+ALLRKATNGQAL LAA+E+E+PLVP+ APRG+R ER   G+RPDRGDRERRAP+PLAE
Sbjct: 421 AAALLRKATNGQALTLAAIEKERPLVPNSAPRGDRPERS--GDRPDRGDRERRAPVPLAE 478

Query: 481 GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSK 540
           GR RCRTALGARDGIAAKNLLGAILNEGGLAR+AIGRIQVRDSFSLVELPEDGLEKLL+K
Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAK 538

Query: 541 LKDTRVAGKQLKLRRYRED 559
           LKDTRVAGKQLKLRRYRED
Sbjct: 539 LKDTRVAGKQLKLRRYRED 557