Pairwise Alignments

Query, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score =  287 bits (734), Expect = 7e-82
 Identities = 154/374 (41%), Positives = 230/374 (61%), Gaps = 4/374 (1%)

Query: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
           FA L L+  ++ AV   GY+ P+ IQ Q+IP +L   D+IG AQTGTGKTA+F LP+++ 
Sbjct: 3   FADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDI 62

Query: 68  IDVSKRE---PQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRN 124
           +   +     P++LIL PTRELA QVA  FE Y K    +++  + GG  MG Q++A+  
Sbjct: 63  LAHGRARALMPRSLILEPTRELAAQVAENFEKYGKYHK-LSMALLIGGVQMGDQIKALEK 121

Query: 125 GAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTV 184
           G  +++ATPGRL D  +R + +L+    LV+DEAD ML +GF+ D+E I   +PA RQT+
Sbjct: 122 GVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQTL 181

Query: 185 LFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEE 244
           LFSAT+P  I+ +A+R L  PK +++       T I Q  + V + +K  A+  +LE E+
Sbjct: 182 LFSATMPPVIKKLADRFLDNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLEAED 241

Query: 245 FDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDV 304
             + + F   K    +L  +L+  G+K+  ++GDI Q  R   ++  +DG ++I+VA+DV
Sbjct: 242 VQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNILVASDV 301

Query: 305 AARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVT 364
           AARGLD+  ++HVFN D P+ P+ YVHRIGRTGRAG  G A   V   +   +  I+++ 
Sbjct: 302 AARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDNIQKLI 361

Query: 365 GQKVAEARLPNAQA 378
           G K+     P A A
Sbjct: 362 GTKIDYVETPVAAA 375