Pairwise Alignments

Query, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  299 bits (766), Expect = 2e-85
 Identities = 160/376 (42%), Positives = 238/376 (63%), Gaps = 11/376 (2%)

Query: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
           FA+L L+  +V A+ A GY +P+ +QQ++IP +L G D++  AQTGTGKT  FALPIL +
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 68  I------DVSKR----EPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGP 117
           +      D S+R    +P+ L+L PTRELA QV  +F+ YA+ +P V+   ++GG  M P
Sbjct: 63  LFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSA-CIFGGVGMNP 121

Query: 118 QLRAIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAI 177
           Q++AI  G  ++VA PGRL D   + +  L+ V+ LVLDEAD ML +GF+ D++ +   +
Sbjct: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181

Query: 178 PATRQTVLFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVL 237
           PA RQ +LFSAT    I  +A++ L  P+ +++     TV  IEQ    + A  K   + 
Sbjct: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLA 241

Query: 238 RLLEVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297
            L+ +  ++ ++ F RTK     LA  LE +G  AAA++G+ +QN R + +   K   + 
Sbjct: 242 HLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVR 301

Query: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRML 357
           ++VATD+AARGLD+ ++ HV N ++P   E YVHRIGRTGRAGR G A+ LV P E ++L
Sbjct: 302 VLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361

Query: 358 QVIERVTGQKVAEARL 373
           + IERVT Q++A+  L
Sbjct: 362 KSIERVTKQRIADGDL 377