Pairwise Alignments

Query, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

Subject, 563 a.a., ATP-dependent helicase from Magnetospirillum magneticum AMB-1

 Score =  285 bits (728), Expect = 4e-81
 Identities = 175/476 (36%), Positives = 247/476 (51%), Gaps = 18/476 (3%)

Query: 5   TGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPI 64
           T  F  L L P I+ A+  +GY  P+ IQ Q+IP++L G D++G AQTGTGKTA+F LP+
Sbjct: 17  TTTFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPM 76

Query: 65  LNKIDVSK---REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRA 121
           +  +   +   R P++LILAPTRELA QVA  F+ Y K  P +    + GG  M  Q+  
Sbjct: 77  IEILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHP-LKKALIIGGESMSDQVAL 135

Query: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATR 181
           +  G  +++ATPGRL D   R   +L+ V+ LV+DEAD ML +GF+ D+E I   +P  R
Sbjct: 136 LDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIR 195

Query: 182 QTVLFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLE 241
           QT+ FSAT+   IR +A+  L  PK VK+ T     T + QA  +V    K   +  L+ 
Sbjct: 196 QTLFFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKRETLRHLIR 255

Query: 242 VEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301
           +EE      F   K+    L  +L+  G+    L+GD+AQ+ R   ++  K G   ++V 
Sbjct: 256 IEEVKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARLMVC 315

Query: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIE 361
           +DVAARG+D+  ++HVFN D+P   E YVHRIGRTGRAG +G A  + +P + R +  IE
Sbjct: 316 SDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGHAFTIASPDDGRFVGAIE 375

Query: 362 RVTGQKVAEARLPNAQAV-LDARIKKLTSSLAPLVAEAEATHGELFDRLTTDLGCSARAL 420
            + G  +    +    A+ LD   +K                G   D      G    A 
Sbjct: 376 AMIGTTIPRISVEGVPALDLDMTARK-----------GRGGRGAPKDAKRPARGKDDEAK 424

Query: 421 ASALLR-KATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAP 475
                R +       + A VE   P      PR ER ER  RG   DR +  R  P
Sbjct: 425 PRRERRPRRDEAPVAEAAPVEAAAPEEVIERPREERPER-SRGRGRDREEPRRDEP 479