Pairwise Alignments

Query, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

Subject, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli ECRC62

 Score =  449 bits (1155), Expect = e-130
 Identities = 262/558 (46%), Positives = 357/558 (63%), Gaps = 18/558 (3%)

Query: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67
           FA L L   I+ A+   GYE+PS IQ + IP +L G D++G AQTG+GKTAAF+LP+L  
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 68  IDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNGAQ 127
           +D   + PQ L+LAPTRELA+QVA A   ++K M GVNVVA+YGG     QLRA+R G Q
Sbjct: 68  LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127

Query: 128 IVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLFS 187
           IVV TPGRL DHL+R    LS +  LVLDEADEML++GF++D+E I   IP   QT LFS
Sbjct: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187

Query: 188 ATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFDA 247
           AT+P +IR I  R ++EP+ V+IQ+   T   I Q++  V   +K  A++R LE E+FDA
Sbjct: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247

Query: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307
            I FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ ++ LKDGRLDI++ATDVAAR
Sbjct: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307

Query: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQK 367
           GLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ IER     
Sbjct: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367

Query: 368 VAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTTDLGCSA-------RAL 420
           + E  LPNA+ +   R++K     A +  + E++  + +  L + +  +A         L
Sbjct: 368 IPEVELPNAELLGKRRLEKFA---AKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETL 424

Query: 421 ASALLRKATNGQALDLAAVEREQPLVP--SFAPRGER--TERGERGERPDRGDRERRAPL 476
           A+ALL+ A   + L    V  + P+ P   F  R +R   +R +RG R DR DR RR   
Sbjct: 425 AAALLKMAQGERTL---IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481

Query: 477 PLAEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEK 536
            + + ++  R  +G  DG+  ++++GAI NEG ++   IG I++  S S +ELP+    +
Sbjct: 482 DVGDMQL-YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 540

Query: 537 LLSKLKDTRVAGKQLKLR 554
           +L     TR+  K + ++
Sbjct: 541 VLQHFTRTRILNKPMNMQ 558