Pairwise Alignments

Query, 441 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

Subject, 387 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 58/262 (22%), Positives = 122/262 (46%), Gaps = 27/262 (10%)

Query: 116 KEARLRAERDGLDSIPSVIMEGTDSDRAQEALAGEQQVF-KARHDSLLGEISVNRERIQQ 174
           K+A+L+A +D    + + I E       ++ +A E   F K    S+L  ++  + + Q 
Sbjct: 39  KKAQLKAYKDQYHELKNNISE------LEKEIAAEDSTFAKNNRKSVL--VTTVKAQNQA 90

Query: 175 MQQQIAGLNDMIRTK-AGLNKSYSGEIKQLKELLAEGFVDNQRLLEQERKLDMLKTEVAD 233
            +  +     ++  K   ++   +G I+Q++       V       +   L  +  E  D
Sbjct: 91  FEHYLEVTGSVLSKKNVNISAEVAGRIEQIE-------VQEGMRATKGEVLVSIDGESID 143

Query: 234 HQSSITKTKLQIGETELQIVQLKKKFDADVAKELSDVQAQ--VFDLQEKEAALRDRLSRV 291
           +  +  +T+L +  T  +  Q  + +D ++  E+  ++A+  V  L++  A L+ + ++ 
Sbjct: 144 NNIAELETQLDLATTLYEKQQ--RLWDREIGTEVQYLEAKNRVESLEKNLATLKTQKNKT 201

Query: 292 VIRAPESGMVLDMKVHTIGGVVSAATPLLDIVPAQSDLVVEAKVAPRDIDRLELGKTADV 351
            IRAP  G V ++ V  +G +V    P+++ V  +SDL +EA ++   +  LE G +  V
Sbjct: 202 TIRAPYHGTVEEVMVK-LGELVQPGMPIINFV-GESDLYIEADISEAYVGVLEQGDSVRV 259

Query: 352 RFSAFNQATTPVIEGKLTRISA 373
            F +  +     I+ K+T + A
Sbjct: 260 EFPSLGRD----IKTKVTAVGA 277



 Score = 23.9 bits (50), Expect = 0.010
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 60  QNYRKTVQHLEGGIVKELHARDGDLVKKGDPLI-VLDESQLSAE 102
           Q  + T++    G V+E+  + G+LV+ G P+I  + ES L  E
Sbjct: 197 QKNKTTIRAPYHGTVEEVMVKLGELVQPGMPIINFVGESDLYIE 240