Pairwise Alignments

Query, 264 a.a., Lipopolysaccharide ABC export system, permease protein from Pseudomonas putida KT2440

Subject, 256 a.a., O-antigen export system permease protein RfbD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 64.7 bits (156), Expect = 2e-15
 Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 6/194 (3%)

Query: 21  NEFISRFARSKLGGLWMIIHPLAQVAIYALILSNVLAAKLPGIDNKYAYALYLMAGILAW 80
           N+ + R+ RS LG  W+ I     ++    +  ++ ++   G +N   + ++L  G++ W
Sbjct: 20  NDVLGRYRRSVLGPFWITISMGVTISAMGPLYGSLFSS---GSEN---FIMHLTLGMIFW 73

Query: 81  NLFAEIVSRCLTLFIEQGNIMKKMRFPRITLPVIVVGSCLLNNVLLFAAVMLVFSLLGHY 140
              +  ++    +F E  +I+K+   P     + V     +  +  F  +  V       
Sbjct: 74  AFLSATINESCGIFNESASIIKQSDLPLYLYILRVFYRQFMIMLHNFIIIPFVIFFTNTS 133

Query: 141 PTLQILWLIPLVMIVVALSVGIGLVLGILNVFLRDVGQVVPIVLQVLFWFTPIVYMVNVI 200
             L IL  IP ++I     +  G++L I     RD+G VV  V+ + F+ TPI++    +
Sbjct: 134 VNLDILLFIPAIVITSISLISTGMILAIFCTRYRDMGPVVQSVVTLCFFITPIIWTSEQL 193

Query: 201 PEHLRATLSFNPMY 214
           P+  +  + +N  Y
Sbjct: 194 PKGRKEFVDYNIFY 207