Pairwise Alignments

Query, 287 a.a., choline / betaine / carnitine ABC transporter - substrate binding protein BetX from Pseudomonas putida KT2440

Subject, 314 a.a., Carnitine uptake ABC transporter, periplasmic component from Pseudomonas putida KT2440

 Score =  100 bits (250), Expect = 3e-26
 Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 16/274 (5%)

Query: 23  SAAQAMAKEVSIGYVDGWADSVATTNVAAEVIKQKLGYDVKLQAVATGIMWQGVATGKLD 82
           +A  A  K V +G V+ W D +AT+ +A +V+   LGY  K  + +  I++ G+   +LD
Sbjct: 24  AAEPAACKNVRLGVVN-WTDVIATSAMA-QVLLDGLGYQTKQTSASQQIIFAGIRDKRLD 81

Query: 83  AMLSAWLPV---THGEYWAKNKDNVVDYGPNFKDAKIGLIVPEYVKAVSI---ADL-KTD 135
             L  W P+   T   +   N+  V+D  P+ +DA+  L VP+Y+    +   AD+ K +
Sbjct: 82  MFLGYWNPIMTQTITPFVDANQFKVLDK-PSLEDARATLAVPKYLYDKGLKTFADIHKFE 140

Query: 136 NSFKDRIVGIDAGSGVMLKTDQAI--KDYGLTSYKLQASSGAAMTAELGRAYAKQQSIAV 193
                +I GI+ GSG   +    I    + L  ++L  SS A M A + RA  +++++  
Sbjct: 141 KELGGKIYGIEPGSGANTQIKAMITKNQFDLGKFQLVESSEAGMLAAVDRAVRRKEAVVF 200

Query: 194 TGWVPHWMFAKWKLKFLEDPKGVYGAAE---TVNSIGSKELATKAPEVAEFLKKFNWQSK 250
            GW PH M     + +L D +   G  E   TV ++ + + A + P     L    + ++
Sbjct: 201 FGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAERCPNALRLLANLKFSAE 260

Query: 251 DEIGEVMLAIQEGAKPEAAAKDWVAKHPDRVKEW 284
           DE   +M  + +      +A+ W+  HP+    W
Sbjct: 261 DE-SRMMQPLLDHKDALESARQWLKDHPEDKARW 293