Pairwise Alignments

Query, 287 a.a., choline / betaine / carnitine ABC transporter - substrate binding protein BetX from Pseudomonas putida KT2440

Subject, 307 a.a., putative choline betaine-binding protein from Pseudomonas putida KT2440

 Score =  122 bits (307), Expect = 8e-33
 Identities = 84/289 (29%), Positives = 134/289 (46%), Gaps = 14/289 (4%)

Query: 8   MRRFLGVGTALVMAMSAAQAMAKEVSIGYVD----GWADSVATTNVAAEVIKQKLGYDVK 63
           M +F     AL ++ + A A   +     V     GW+D +A+TN  A ++ + LGY VK
Sbjct: 1   MHKFSAAVFALALSATTAHAADSDAQCSTVKMADPGWSD-IASTNAVARLLLESLGYQVK 59

Query: 64  LQAVATGIMWQGVATGKLDAMLSAWLPVTHG--EYWAKNKDNVVDYGPNFKDAKIGLIVP 121
           + ++A  I++ G+  G++DA L  W+P   G  + +  N D V     N +  +  L VP
Sbjct: 60  IDSLAVPIIYGGLKDGQVDAFLGNWMPAQQGFHDKFIANGD-VQQLSRNLEGTEFTLAVP 118

Query: 122 EYVKAVSIADL----KTDNSFKDRIVGIDAGSGVMLKTDQAI--KDYGLTSYKLQASSGA 175
           +YV    + D     K    F  ++ GI +G+   L     I   ++ L  +KL  SS  
Sbjct: 119 DYVWNAGVKDFADLQKHAGQFDKKLYGIGSGAPANLSLKAIIDKNEFNLGQWKLVESSEQ 178

Query: 176 AMTAELGRAYAKQQSIAVTGWVPHWMFAKWKLKFLEDPKGVYGAAETVNSIGSKELATKA 235
           AM A++ RA  KQQ I   GW PH M  K K+ +L   +  +G+   V ++  K      
Sbjct: 179 AMLAQVDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGSKGEVYTLTRKGYPQAC 238

Query: 236 PEVAEFLKKFNWQSKDEIGEVMLAIQEGAKPEAAAKDWVAKHPDRVKEW 284
           P  A+ L    +    E   +   + +    + AAK WV  HP+R+  W
Sbjct: 239 PNAAKLLGNLKFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPERLDGW 287