Pairwise Alignments

Query, 1159 a.a., putative Sodium-solute symporter/sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1167 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  858 bits (2218), Expect = 0.0
 Identities = 519/1176 (44%), Positives = 726/1176 (61%), Gaps = 48/1176 (4%)

Query: 3    LSSGLIAVVALAYMAIMFAIAFYGDR-RSTPLPPKLRAWVYSLSLAVYCTSWTFFGAVGQ 61
            L + ++  VALAY+ ++FAIA YGDR R        R  +YSLSLAVYCTSWTFFG+VG 
Sbjct: 2    LQASVVIFVALAYIGLLFAIASYGDRLRPGAGRGAARPMIYSLSLAVYCTSWTFFGSVGL 61

Query: 62   AAEQLWAFLPIYLGPVLLLIFAPWVLQKMVLISKQQNITSIADFIAARYGKSQTLAVVVA 121
            A  Q + FL IYLGP++L+     +  ++V ++K  NITSIADFIAARYGK+Q +A +VA
Sbjct: 62   ATTQGFDFLTIYLGPIILMTVGAPLFLRVVRLAKANNITSIADFIAARYGKNQGIAALVA 121

Query: 122  LICLVGVLPYIALQLKGIVLGVNLLIG--ANADATGTRVQDTALVISLVLALFAIVFGTR 179
            ++ ++  +PYI+LQLK +   +  L+G  A     GT V D AL ++  +A FAI+FGTR
Sbjct: 122  IVAIIAAIPYISLQLKAVSASLVALLGHFAGEHGRGTLVGDLALFVACAMAAFAILFGTR 181

Query: 180  SLDVTEHHRGMVLAIAFESLIKLLAFLAVGIFIVFNLFDGFDDLFSQARQSIHLQDYWK- 238
              D TEH  G++LAIA ESL+KL AFL VG+ + F +FDG   L+  AR++  +  + + 
Sbjct: 182  HTDATEHQNGLMLAIATESLVKLAAFLGVGLLVTFVIFDGPFSLWYAAREASAVAPFERG 241

Query: 239  -ETINWPSMVVQTAVAMMAIICLPRQFHVTVVENIEPQDLRLARWVFPMYLALAALFVVP 297
                NW +M + +  A M    LPRQFHV VVEN    ++R ARW+FP+YL L  LFVVP
Sbjct: 242  LSLENWLTMTILSGGAFM---LLPRQFHVAVVENKGESEIRRARWLFPLYLVLINLFVVP 298

Query: 298  IALAGQMLLP-GTVISDSFVISLPLAEAHPSLALLAFIGGASAATGMVIVEAVALSTMVS 356
            +ALAG  L P   V SD +V+++PLA    SLALLAF+GG SAAT MVIVE VA++ MVS
Sbjct: 299  LALAGMTLFPLNLVDSDVYVLAVPLAAGFDSLALLAFVGGLSAATAMVIVECVAIAIMVS 358

Query: 357  NDMLLPWLLRRNNAE---RPFEAFRHWMLSVRRVTIVVILLLAYVSYRLLGSTASLATIG 413
            ND+++P +LRR  A+    P E     +L VRR++I  I+LLAY+ YR  G  A LA IG
Sbjct: 359  NDLVMPLVLRRRAAKPEGEPREDMTGLLLMVRRISIFAIVLLAYLYYRTTGE-AQLAQIG 417

Query: 414  QIAFAAVTQLTPAMLGALYWKQANRRGVFAGLAAGIFLWFYTLVLPIAAHS---LGWSLQ 470
             ++FAA+ Q+ PA    L W++A   G  AG+  G   W YTL++P  A +       LQ
Sbjct: 418  LLSFAAIAQVGPAFAAGLIWQRATAAGAIAGIVVGGATWAYTLMMPSLAEAGLISAGVLQ 477

Query: 471  LFP-GLAWLHGNP-LNLPISPLTQGVVLSLAGNFTLFAWVSVLSRTRVSEHWQAGRFIGQ 528
              P G++ L     L L   PL  GV  SL  N      VS L+R    E  QA  F G 
Sbjct: 478  NGPFGISLLRPTALLGLTAGPLAHGVAWSLGLNTLALVIVSFLTRPSQIERTQARLFAG- 536

Query: 529  QTSARPSSKPLL-----AVQIDDLLTLASRFVGEERARQSFIRFAYRQGKGFNPNQNADG 583
             T  RP ++P       +V + +L+    R++G ERAR +F  +A + G   + ++ AD 
Sbjct: 537  -TGDRPPARPAFLRWRSSVSLGELMATVERYLGAERARAAFDSYARQHGFALDTHREADA 595

Query: 584  DWIEHTERLLAGVLGTSSTRAVVKAAIEGRDMQLEDVVRIADEASEVLQFNRALLQGAIE 643
              + H E LLA  +G +S+R V+   +  R +  +  +++ D+AS  +Q+NR LLQ AI+
Sbjct: 596  GMVRHAEHLLASAVGAASSRLVLSLLLRKRAVSTKAALKLLDDASAAIQYNRELLQSAID 655

Query: 644  NINQGISVVDQNLHLVAWNRRYLELFNYPDGLISVGRPIADIIRYNAERGLCGPGEAQVH 703
            ++ QGI+V D++L LV WNR++ ++ + P    +VG P+ DI+   A       G+    
Sbjct: 656  HVRQGIAVFDRDLRLVCWNRQFGQMLDLPGECYAVGVPLTDILA-AAPADEDVAGDISAR 714

Query: 704  VARRLHWMRQGRAHSSERLFPNGRVIELIGNPMPGGGFVMSFTDITPFREAEQALRDANE 763
            VAR +          SERL   G VIE   +PMP GG  ++FTDIT   EA  AL  ANE
Sbjct: 715  VARYV----TPDPDFSERLHQRGAVIEARSDPMPDGGIAVTFTDITASVEAALALERANE 770

Query: 764  RLEQRVAERTHELSQLNQALSEAKSQAEAVSNSKTRFLAAVSHDLMQPLNAARLFSAALS 823
             LE+RV ERT EL +LN AL  AK++A+  + SKTRFLAA SHD++QPLNAARL++ ++ 
Sbjct: 771  TLEKRVRERTEELERLNGALELAKAEADEANLSKTRFLAAASHDILQPLNAARLYATSMV 830

Query: 824  QQAEGMNEEARQLVQHMDSSLRSAEELISDLLDISRLENGKITPDAKPFALNELFDTLGA 883
            ++A+G  EE  +L  ++D+SL S EE++  LLDISRL++G + P+   F + ++   L  
Sbjct: 831  ERAKGSEEE--RLAGNIDASLESVEEILGALLDISRLDSGVMRPEFSAFRIADVLKPLET 888

Query: 884  EFKLLAAEKGLEFRLRGSRLRVDSDMKLLRRVLQNFLTNALRY-GKSPILLGARRQGERL 942
            EF  LA EK LE       L V SD +LLRR+LQN ++NA++Y  +  IL+G RR G +L
Sbjct: 889  EFAPLAREKNLELTFLPCSLAVRSDRRLLRRLLQNLVSNAVKYTQRGRILVGCRRVGGKL 948

Query: 943  WLEVWDRGPGIADDKLQVIFQEFKRLDSHQTRAEKGLGLGLAIADGLCRVLGHPLEVRSW 1002
             +EV+D G GI   K +++FQEF+RLD    +A +GLGLGL+I + + RVL HP+ +RS 
Sbjct: 949  RVEVYDTGVGIPRSKHKLVFQEFQRLD-QGAKAARGLGLGLSIVERIARVLEHPVALRST 1007

Query: 1003 PGKGTVFRVSVPIA------RQAAAAPSTPVEQQGGQPLAGLQVLCVDNEDSILIGMNSL 1056
             GKG+ F V +P+A      R+AA +P+     + G  L GL +L +DNE +IL GM  L
Sbjct: 1008 HGKGSAFTVELPVAVSMPEEREAAPSPA-----RRGAQLDGLTILAIDNEPTILEGMQML 1062

Query: 1057 LSRWGCQVWTARN-QAECEALLAKGMRPHLALVDYHLDDGETGTGLMGWLRARLGEPVPG 1115
            L+ WGC V TA N Q   EA+  +  +P +ALVDYHLD G     +M  LR +LG+ +P 
Sbjct: 1063 LTGWGCDVITAANAQGAIEAVRHRRKKPDVALVDYHLDGGHGIEAIMS-LRWKLGK-IPA 1120

Query: 1116 VVISADGSKETIALVHASGLDYLAKPVKPAALRALL 1151
            V+I+AD SK+      A+ ++ L KP+KPAALRA+L
Sbjct: 1121 VLITADRSKKVRDAARAADMEILNKPLKPAALRAIL 1156