Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 281 GDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAM 340
           G F Q N  VN  M+  A   L  + D+ +L+L+CG GNF LPLA + R+V+A E  +  
Sbjct: 179 GAFTQPNGTVNQKMLNWAYEALGDRPDD-LLELYCGNGNFTLPLATRVRKVLATEISKTS 237

Query: 341 VDRAAANARNNNVHN---ARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRDG 388
           V+ A +N   N V N    R    +L++          L G    +  F +V +DPPR G
Sbjct: 238 VNAALSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAG 297

Query: 389 AFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMAL 448
                  + R +   ++Y+SCNP TLA +   L    +++ +  + D FP T H+E+  L
Sbjct: 298 MDPDTCELTR-RFDNILYISCNPETLAANIAQL-HDTHKITQCAMFDQFPWTHHMESGVL 355