Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 450 a.a., 23S rRNA methyltransferase from Pseudomonas simiae WCS417

 Score =  663 bits (1710), Expect = 0.0
 Identities = 331/448 (73%), Positives = 370/448 (82%)

Query: 5   KSNSGLRFQPAGGNRTPQVPVGKKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEA 64
           K   GLRFQP GG+R PQ+PVGKKQRL IERLA DGRGI F +GRTWFV+GALAGE VEA
Sbjct: 3   KHERGLRFQPTGGSRAPQIPVGKKQRLTIERLANDGRGIVFFEGRTWFVNGALAGEEVEA 62

Query: 65  RVLNARGKVVEARLERLLQAAPERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQL 124
           RVL   GK+VEAR ER+  A+  RR APC ++ RCGGC++QHLPH  QLALKQR LAEQL
Sbjct: 63  RVLGTHGKIVEARTERVFSASELRRPAPCAHFGRCGGCSVQHLPHGEQLALKQRMLAEQL 122

Query: 125 QRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVL 184
            RVAGV+P+ WAAPLSG EFGYRRRARVAVRWD +A+QLEVGFRA ASQDI+AID+C VL
Sbjct: 123 SRVAGVEPQEWAAPLSGAEFGYRRRARVAVRWDARAKQLEVGFRAVASQDIVAIDECPVL 182

Query: 185 VQPLQSILRHLPTVLRSLSKPQALGHVELFSGTAEAVLVRHVAPLPAEDQARLQAFCEQA 244
           VQ LQ I++ LP +LR LSKPQALGHVELFSGT+ AVL+RH+APL   D   L+ FC   
Sbjct: 183 VQALQPIMQRLPNMLRRLSKPQALGHVELFSGTSVAVLLRHIAPLSEADLQVLKEFCAFH 242

Query: 245 NAQLWLQGEGEPAPVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAP 304
            AQLWL GEG+P PV+  + LGF L+ W LELA+RPGDFVQVNA VN AM+ QAL WLAP
Sbjct: 243 EAQLWLHGEGQPEPVEADSVLGFRLSHWDLELAYRPGDFVQVNAGVNEAMVAQALEWLAP 302

Query: 305 QADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLS 364
           Q DERVLDLFCGLGNFALPLARQ REVVAVEGVQ MV+RAA NA +N++HN +FFQADLS
Sbjct: 303 QPDERVLDLFCGLGNFALPLARQVREVVAVEGVQTMVERAAVNAVSNDLHNVQFFQADLS 362

Query: 365 QPLAGTGWAAEGFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQ 424
           QPL    WA +GFSAVLLDPPRDGA EVV+ +A L A+RLVYVSCNPATLARD   LV Q
Sbjct: 363 QPLTDAEWAKQGFSAVLLDPPRDGALEVVRKLATLGAKRLVYVSCNPATLARDTVELVKQ 422

Query: 425 GYRLKRAGILDMFPQTAHVEAMALFEAG 452
           GYRLKRAGILDMFPQTAHVEAMALFEAG
Sbjct: 423 GYRLKRAGILDMFPQTAHVEAMALFEAG 450