Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 478 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Variovorax sp. SCN45

 Score =  256 bits (654), Expect = 1e-72
 Identities = 168/459 (36%), Positives = 244/459 (53%), Gaps = 40/459 (8%)

Query: 31  LDIERLAGDGRGIAF-LDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAAPERR 89
           L +E L  D +G++   DG   F+ GAL  E V+  V   +    +  +  + + + +R 
Sbjct: 19  LQVESLDLDAQGVSHKADGMVVFIEGALPFEEVQFNVHRRKNNWEQGTVTAIRRESSQRV 78

Query: 90  EAPCRYYD----RCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFG 145
              C ++      CGGC +QHL   AQ+A+KQR L + L  +  V+PE    PL GP + 
Sbjct: 79  RPGCPHFGLHTGACGGCKMQHLDAAAQVAVKQRALEDNLWHLGKVKPENLLRPLEGPAWH 138

Query: 146 YRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKP 205
           YR RAR++VR  VK   + +GF    S+ +  +  C VL + +  +L  L  ++ SL   
Sbjct: 139 YRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQVSEMLMPLRALIGSLDAR 198

Query: 206 QALGHVELFSGTAE--------AVLVRHVAPLPAEDQARLQAFC-EQANAQLWLQGEGEP 256
                +EL  G A         A+++RH+ PL   D  RL+AF  E    Q WLQ +G P
Sbjct: 199 DTCPQIELACGDAPDSTKLGTIALVLRHLEPLSRADIDRLKAFAAENEGVQWWLQAKG-P 257

Query: 257 APV----DPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLD 312
             V    +  + L + L  + + + ++P DF QVN  +N A++ +AL  L  Q DERV+D
Sbjct: 258 DTVKLLEEGGSPLSYRLPEFGVTMPFKPTDFTQVNPHINRALVGKALRLLDVQPDERVID 317

Query: 313 LFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNN--------NVHNARFFQADLS 364
            FCGLGNF LPLA QAREV+ +EG   +V RA AN   N         +  A+F   +L 
Sbjct: 318 WFCGLGNFTLPLASQAREVLGIEGSDTLVARATANYGTNQPATSARRELSPAKFVARNLF 377

Query: 365 QPLAGTGWAAEGFSAVLLDPPRDGAFEVVQGIARL------------KARRLVYVSCNPA 412
           +               L+DPPR+GAF + + +A L              +R+VYVSCNP+
Sbjct: 378 EMTPAMLVEDGSADKWLVDPPREGAFALAKAMADLHQQPELCTDGWTPPKRIVYVSCNPS 437

Query: 413 TLARDAQVLVGQ-GYRLKRAGILDMFPQTAHVEAMALFE 450
           TLARDA +LV Q GYR   AG+++MFP TAHVE++A+FE
Sbjct: 438 TLARDAGLLVHQAGYRCTFAGVVNMFPHTAHVESIAVFE 476