Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 361 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas putida KT2440

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 95/362 (26%), Positives = 154/362 (42%), Gaps = 36/362 (9%)

Query: 109 HEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDVKARQLEVGFR 168
           +  QL  K   L E L      +P    A    P   YR RA   + W    ++    F 
Sbjct: 10  YATQLDAKVARLRELLAPFGAPEP----AVFDSPREHYRLRAEFRL-WREDGQRHYAMFA 64

Query: 169 AEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSK-PQALGHVELFSGTAEAVLVRHVA 227
                  I IDD  +  + + +++  L    ++  +    L  VE  +  A   ++    
Sbjct: 65  PGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMITMCY 124

Query: 228 PLPAEDQARLQA--FCEQANAQLWLQGEGEPAPVDPAAQLGFALAPWQLELAWR------ 279
             P ++   ++A    E     +  + +G+   +      G   A  +L++A R      
Sbjct: 125 HRPLDEAWEVEARQLAEALGVSVIGRSKGKRLVI------GRDYAVEKLDVAGRVFSYRQ 178

Query: 280 -PGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQ 338
             G F Q N  VN  M+  A   +  + D+ +L+L+CG GNF LPLA + R+V+A E  +
Sbjct: 179 PEGAFTQPNGAVNQKMLSWAFEAIGEREDD-LLELYCGNGNFTLPLATRVRQVLATEISK 237

Query: 339 AMVDRAAANARNNNVHNARFFQ---ADLSQP---------LAGTGWAAEGFSAVLLDPPR 386
             V+ A +N   N V N R  +    +L+Q          L G    +  F  V +DPPR
Sbjct: 238 TSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDPPR 297

Query: 387 DGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAM 446
            G       + R +  R++Y+SCNP TLA +   L    +R++R  + D FP T H+E+ 
Sbjct: 298 AGMDPDTCELTR-RFERILYISCNPETLAANIAQL-QDTHRIERCALFDQFPYTHHMESG 355

Query: 447 AL 448
            L
Sbjct: 356 VL 357