Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 438 a.a., class I SAM-dependent RNA methyltransferase from Magnetospirillum magneticum AMB-1

 Score =  162 bits (410), Expect = 2e-44
 Identities = 145/423 (34%), Positives = 201/423 (47%), Gaps = 17/423 (4%)

Query: 31  LDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAAPERRE 90
           L ++++   G GIA LDG T FV   +AG+ V ARV   RG  + A L  +L+  P R  
Sbjct: 23  LTVDQVGARGDGIARLDGETVFVPFTVAGDRVLARVEGKRGDGLTAALIEVLEPGPGRAT 82

Query: 91  APCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRA 150
            PC +Y RCGGC+LQHL        K+  L  QL R      EA   PL       RRRA
Sbjct: 83  PPCAHYGRCGGCSLQHLDDALYAEWKRDLLVTQLARQG--LAEAIVEPLVRIPPASRRRA 140

Query: 151 RVAVRWDVKAR-QLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKPQALG 209
             A     +A+  + +GF   AS  ++ I+ C +L   L   L  L  +L  ++      
Sbjct: 141 TFAF---TRAKGAIVLGFNGRASHTVVDIERCPLLDPALGDALPGLRKLLGGIAIEGGGD 197

Query: 210 HVELFSGTAEAVLVRHVAPLPA-EDQARLQAFCEQANAQLWLQGEGEPAPVDPAAQLGFA 268
                +     VLV   A L   E +   +A      A+L  +  G    V+P A+   A
Sbjct: 198 LTLTLTEGGLDVLVEAPARLDLFERETLAEAAASLDLARLHWRRPG-TGLVEPIARRRAA 256

Query: 269 LAPW-QLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQ 327
           L  +  + +   PG F+Q       A+ E  L+  A   D  V DL+ G G+F+LPLA +
Sbjct: 257 LVHFGGIAVEPAPGGFLQPTRGGELAIAEAILS--ATPKDVPVADLYSGCGSFSLPLALR 314

Query: 328 AREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLAGTGWAAEGFSAVLLDPPRD 387
              V AVEG Q  V    A AR  ++      +    +PLA      +GF A++LDPPR 
Sbjct: 315 G-PVRAVEGEQGPVAALEAAARAASLPLTAEVRDLARRPLA--AHELKGFRAIVLDPPRA 371

Query: 388 GAFEVVQGIARLK---ARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVE 444
           GA      +AR        +  VSCNPATLARD + L   G+R+KR   +D FP +AH+E
Sbjct: 372 GAAAQAAELARPSPGGPTTIAMVSCNPATLARDLRTLCDGGWRIKRVVPIDQFPWSAHLE 431

Query: 445 AMA 447
           A+A
Sbjct: 432 AVA 434