Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 444 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Dickeya dianthicola ME23

 Score =  300 bits (767), Expect = 8e-86
 Identities = 170/414 (41%), Positives = 229/414 (55%), Gaps = 4/414 (0%)

Query: 40  GRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAAPERREAPCRYYDRC 99
           G+G+A   G+T F+ G L GE  E ++   + +   ARL RLL  + ER    C ++  C
Sbjct: 28  GQGVARHQGKTLFIPGVLPGEQAEVQLTEEKRQFAHARLRRLLTTSEERVTPRCPHFSVC 87

Query: 100 GGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDVK 159
           GGC  QH     Q   K   L   + R  G  P      ++   + YRRRAR+A+ +  K
Sbjct: 88  GGCQQQHASQPLQHRSKAAALTHLMTRETGAVPPE-PEVIAESAYAYRRRARLALYYQAK 146

Query: 160 ARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKPQALGHVEL-FSGTA 218
             +L++G+R   S D++ I  C +L   L+++L  L   L  L   + LGHVEL  +   
Sbjct: 147 THRLQMGYRQAGSHDLVDIAACPILCPELEALLAPLRDCLGQLQAVRRLGHVELVLAEQG 206

Query: 219 EAVLVRHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPAPVDPAAQLGFALAPWQLELAW 278
             V++RH+ PL   D+  L AF       L+   E             + +A   L LA+
Sbjct: 207 PLVVLRHLDPLRDADRQALTAFAVLHGTALFSAPEAGALECLHGDMPSYRIAG--LSLAF 264

Query: 279 RPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQ 338
            P DF+QVN  +N  M+EQAL WL PQ  +RVLDLFCG+GNF LPLA +A  VV VEGV 
Sbjct: 265 SPRDFIQVNDGINQRMVEQALTWLDPQPQDRVLDLFCGMGNFTLPLAVRAGSVVGVEGVA 324

Query: 339 AMVDRAAANARNNNVHNARFFQADLSQPLAGTGWAAEGFSAVLLDPPRDGAFEVVQGIAR 398
           A+VD+   NAR N +    F+  DL   +    WAA GF  +LLDP R GA  V+  I +
Sbjct: 325 ALVDKGRENARRNGLTQVTFYHHDLEADVTLQPWAAMGFDKILLDPARAGAPGVMPQIVK 384

Query: 399 LKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMALFEAG 452
           L  RR+VY+SCNP TLARD+ VL+  GYRL R  +LDMFP T H+E+MALF  G
Sbjct: 385 LAPRRVVYISCNPTTLARDSNVLMAAGYRLARLAMLDMFPHTGHLESMALFLLG 438