Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Dickeya dianthicola ME23

 Score =  100 bits (249), Expect = 8e-26
 Identities = 104/383 (27%), Positives = 162/383 (42%), Gaps = 40/383 (10%)

Query: 94  RYYD-RCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRARV 152
           RY D  C  C      +  Q+A KQ+ L   L  +A    + W  P++  E  +R +A++
Sbjct: 5   RYNDGSCRSCQWLETAYPQQVADKQQHL---LGLLAAHPVQCWLTPVASAEVAFRNKAKM 61

Query: 153 AVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRS----------- 201
            V   V+   L +  R  ++ D+    DC +    +  +   L T +             
Sbjct: 62  VVSGSVERPLLGMLHRDGSAVDLC---DCPLYPDSVAPVFSVLKTFIARAGLTPYNVARR 118

Query: 202 --------LSKPQALGHVEL-FSGTAEAVLVRHVAPLPAEDQARLQAFCEQANAQ----L 248
                   L++    G   L F   +EA L +  A LP   Q   Q     AN Q     
Sbjct: 119 RGELKYLLLTQSTLSGRFMLRFVLRSEAKLAQLRAALPWLQQQLPQLAVISANIQPVHQA 178

Query: 249 WLQGEGEPAPVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADE 308
            L+GE E  P+  A  L       Q+ L  RP  F Q N QV  A+ + A  W++     
Sbjct: 179 ILEGEQE-IPLTQAQALEERFN--QVPLYIRPQSFFQTNPQVAAALYDAARQWVSALPVR 235

Query: 309 RVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLA 368
            + DLFCG+G F L  A     +  +E     +D A  +A    + N  F   D ++   
Sbjct: 236 SLWDLFCGVGGFGLHCASPETPLTGIEISPEAIDCARRSAVQLGLTNVSFAALDSTRFAV 295

Query: 369 GTGWAAEGFSAVLLDPPRDG-AFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYR 427
           G    A     V+++PPR G   E+   ++R+    L+Y SCN  ++A+D   L    Y+
Sbjct: 296 G---EARTPDLVIVNPPRRGIGAELCDYLSRMAPPYLLYSSCNAESMAKDIARL--PAYQ 350

Query: 428 LKRAGILDMFPQTAHVEAMALFE 450
           +++A + DMFP TAH E + L +
Sbjct: 351 IQQAQLFDMFPHTAHYEVLTLLQ 373