Pairwise Alignments

Query, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

Subject, 463 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Acinetobacter radioresistens SK82

 Score =  322 bits (824), Expect = 2e-92
 Identities = 179/438 (40%), Positives = 259/438 (59%), Gaps = 20/438 (4%)

Query: 33  IERLAGDGRGIAFL----------DGRTWFVSGALAGEAVEARVLNARGKVVEARLERLL 82
           +E  + +GRGIA             G+  F++GAL GE V+AR+ +   ++ EA   +LL
Sbjct: 19  VEVFSHEGRGIAHYGNEPGHPVEKQGKKVFITGALPGETVQARITHHTKRLEEADSVQLL 78

Query: 83  QAAPERREAP-CRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSG 141
                 R  P C ++  CGGC+LQH+  + Q+  KQ  LA  L+  A ++PE W   L  
Sbjct: 79  SEPSSYRIEPVCPHFGLCGGCSLQHMHPDEQIRFKQDVLASHLKHFAAIEPEEWLPALRS 138

Query: 142 PEFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRS 201
               YRR+AR+ VR+  K ++L+ GFR   +  +++I  C VL + +   L  L  +L S
Sbjct: 139 TREDYRRKARIGVRFLAKEQKLKFGFRERQTNHLVSIQTCKVLDRAMAGHLNELQLLLES 198

Query: 202 LSKPQALGHVELFSGTAE-AVLVRHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPA--- 257
           L+   A+GH+EL  G  + A+++R++  LP  D  +L  +      QL+LQ  G  +   
Sbjct: 199 LTAKAAIGHIELAMGDHDIALVIRNIEKLPQVDVNQLTQYALSRQWQLYLQPAGPESLYR 258

Query: 258 --PVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFC 315
               D +  L + L  + ++ A+ P DF QVN+ VN+ M+  A   L  Q  ERVLDLFC
Sbjct: 259 VDQPDASKYLHYRLEEFDIDFAFSPLDFTQVNSTVNSQMVSLACNLLNLQPGERVLDLFC 318

Query: 316 GLGNFALPLAR---QAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLAGTGW 372
           GLGNF+LPLAR   +  +V+AVEG + MV R   NAR+N + N RF+  DL++  +   W
Sbjct: 319 GLGNFSLPLARCVGETGQVIAVEGSEDMVKRGTENARSNKLLNVRFYSQDLTKDFSSHSW 378

Query: 373 AAEGFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAG 432
           A +GF A+L+DPPR GA EV+  +    A+R+VYVSCNPATLARDA +LV  GYRLK+AG
Sbjct: 379 AKQGFDALLIDPPRAGAEEVMHYLPNFNAKRIVYVSCNPATLARDAGILVEHGYRLKKAG 438

Query: 433 ILDMFPQTAHVEAMALFE 450
           ++DMF  T HVE++ LFE
Sbjct: 439 VMDMFTHTGHVESIVLFE 456