Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 633 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  262 bits (669), Expect = 6e-74
 Identities = 205/666 (30%), Positives = 314/666 (47%), Gaps = 56/666 (8%)

Query: 4   RLGIRSRVLLLALLPAGLMALVLGSYFTWLQQNDLRTQLLQRGKMIAEQLAPLAAPAMAR 63
           R  I +R  L+ L PA L+ L+L S+FT+++  DLR +L   G++IA QLAP     +  
Sbjct: 6   RWDINTRTQLITLGPALLLTLLLISFFTFVRIQDLRQELDHTGQLIANQLAPATEYGVIS 65

Query: 64  LAPAQLERIAAQTLEQADVRAVAFLAPDRTRLAHAGPSMLNLPPSGGTGTQLLQRSGNDA 123
                L+ +   TL    VR +         L +         PS      L  +     
Sbjct: 66  GNNDVLDSLLRATLATPHVRFLEIQDSSENILVYVEQ------PSEKHDRSLSVKV---- 115

Query: 124 TRYLMPVFGHHRDLATDAVP-------AEAERLLGWVEIELSHDGTLLRGYRNLFTSLLL 176
             +  P+   H  L  D          A     LG V + +S+D    R    LF + +L
Sbjct: 116 --FQAPIRLQHIQLGNDFFQDNLNESKAPRADYLGRVIVGMSNDAFSQRQQEILFKAGIL 173

Query: 177 ILACLALSGLLALRMSRTINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELAHGINRM 236
            L  L  + LLA R++ +++ PI  + HAV  ++ G  +  LP +   EL +L+  IN +
Sbjct: 174 ALFALLFTFLLARRLAASLSQPISAMGHAVKAIQQGDYKTPLPIVDDSELGDLSRHINNL 233

Query: 237 AETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHE 296
           AE L  A  E Q ++ Q                  L   R+EA  A+  KS+FLA MSHE
Sbjct: 234 AEGLNQASREQQQAMAQ------------------LIQTREEAERANNAKSDFLAMMSHE 275

Query: 297 IRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDS 356
           +RTP+NG+LG   LL+ +EMT  Q +Y     +S ++LL +IN+ILDFS+IE   L L+ 
Sbjct: 276 LRTPMNGVLGMLQLLETTEMTEEQTEYAALASESTEHLLKVINDILDFSRIERAALELEH 335

Query: 357 IPFNLRDLIQDTLTILAPAAHAKQLEL-LSLIYRDTPASLVGDPLRLKQILTNLVSNAIK 415
           IPFNL DLI         +A  + L L LS+        + GDP R++QIL NL+ NA+K
Sbjct: 336 IPFNLADLINSCAQAFQHSAQQRGLALELSIPPGMDTLRVQGDPTRIRQILVNLIGNALK 395

Query: 416 FTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGT 475
           FT  G + +    +    +      +V+D+GIG+S + +  +F AF QAD+S++R+ GGT
Sbjct: 396 FTEHGNVSIEPHWQTLDHELVWFTCTVRDSGIGISAERLELMFDAFQQADSSISRRYGGT 455

Query: 476 GLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL-------NLPKAHDDAEALPPQPLLG 528
           GLGL I++ L E+MGG +   S    GS F + +       ++P    DA+        G
Sbjct: 456 GLGLPIARTLAERMGGTLRAQSEEARGSVFTLEIPLAIDQHSVPAIASDADGKTGAG-DG 514

Query: 529 RRAAIVDGHELARQALEHQLEDCGLSVSLFASYDQLLQGVQAASQAGLPFEFAVLGANLG 588
           R   +V+ + + R  +E  L   G  VSL     + ++  ++     L F   ++   L 
Sbjct: 515 RHVLLVEDNPVNRAVVEAMLRSLGFEVSLATDGAEAIRSAES-----LIFTAILMDCRLP 569

Query: 589 NLSPEQLGHYHQQLERYHCQCVVLCPTTEQALY---HPYLPNGHGQLLSKPTCTRKLRRL 645
            +   +     +QL    C  + +   T  AL       L  G    L+KP     L+++
Sbjct: 570 VIDGYEATRQIRQLP--GCADLPIIALTANALQGDREACLAAGMNDYLAKPFKRTDLQQI 627

Query: 646 LLELVQ 651
           L   VQ
Sbjct: 628 LQRWVQ 633



 Score = 90.1 bits (222), Expect = 4e-22
 Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 4/131 (3%)

Query: 657 AEGSNPNGQRRPKILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVL 716
           A+G    G  R  +L V+DN  N  +V+ +L  LG EV    +G  A+++ +  +F  +L
Sbjct: 505 ADGKTGAGDGR-HVLLVEDNPVNRAVVEAMLRSLGFEVSLATDGAEAIRSAESLIFTAIL 563

Query: 717 MDVQMPGMDGRACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPIS 776
           MD ++P +DG   T QIR          LPI+ALTA+A+  ++ A L +GM+DYL KP  
Sbjct: 564 MDCRLPVIDGYEATRQIRQLPGCAD---LPIIALTANALQGDREACLAAGMNDYLAKPFK 620

Query: 777 ERQLAQVVMKW 787
              L Q++ +W
Sbjct: 621 RTDLQQILQRW 631