Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  335 bits (858), Expect = 1e-95
 Identities = 208/541 (38%), Positives = 297/541 (54%), Gaps = 18/541 (3%)

Query: 256  EDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSE 315
            EDV Q   T E Q      A+  A +A+R KS+FLANMSHEIRTP+N I+G  HL  K++
Sbjct: 694  EDVTQARATAEAQA----RAKDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTD 749

Query: 316  MTPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPA 375
            + PRQ DY+  I++S  +LLGIIN+ILDFSKIEAGKL +++   +L  ++++   +++  
Sbjct: 750  LDPRQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEK 809

Query: 376  AHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDC 435
            A AK LELL  +    P  L+GD LRL Q+L N  +NA+KFT  G IVV   L ++    
Sbjct: 810  ATAKGLELLFDVGAGVPLDLMGDALRLGQVLINYANNAVKFTEAGEIVVAVRLMEDLGPD 869

Query: 436  AQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGV 495
              LR  V+DTGIGL+ +    LFQ+FSQAD S  R+ GGTGLGL ISK+L E MGG +GV
Sbjct: 870  VMLRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGV 929

Query: 496  DSTPGEGSQFWISLNLPKAHDDAEALPPQPLLGRRAAIVDGHELARQALEHQLEDCGLSV 555
            DS PG+GS FW +  L K    A  +P   L GRR  +VD +E AR  L   L      V
Sbjct: 930  DSVPGQGSTFWFTARLGKGKPRAPLIPEAELQGRRMLVVDDNENARAVLVDMLSAMSFEV 989

Query: 556  SLFASYDQLLQGVQAASQAGLPFEFAVLGANLGNLSP-EQLGHYHQQLERYHCQCVVLCP 614
                S  + L  ++ A    LP++   L   + ++   E     H     +    +++  
Sbjct: 990  DAVDSGAKALDAIRDA-VLDLPYDVVFLDWQMPDMDGLEVAEQIHSIRLPFPPHLIMVTA 1048

Query: 615  TTEQALYHPYLPNGHGQLLSKPTCTRKLRRLLLELV--QPRRPLAEGSNPNGQ------R 666
               + +         G++L KP     L   ++ +     RR  AE  +  G       R
Sbjct: 1049 YGREEIIKGAQAADIGEVLIKPVSPAALFDSIMRVFASDQRRDEAEDVSEGGSVDHAALR 1108

Query: 667  RPKILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDG 726
              K+L V+DN  N  +   +L D G EV   +NG  AV+  +  ++DL+LMD+QMP MDG
Sbjct: 1109 GLKVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEKARAGVYDLILMDMQMPVMDG 1168

Query: 727  RACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMK 786
               T +IR   +      LPI+A+TA+AM  ++   L +GM+D++ KPI    +   + +
Sbjct: 1169 VTATREIRRLGHVD----LPIIAMTANAMQADRDKCLEAGMNDHIAKPIDPDTMFSTISR 1224

Query: 787  W 787
            W
Sbjct: 1225 W 1225