Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 918 a.a., Signal transduction histidine-protein kinase BarA from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  548 bits (1411), Expect = e-160
 Identities = 341/921 (37%), Positives = 510/921 (55%), Gaps = 41/921 (4%)

Query: 7   IRSRVLLLALLPAGLMALVLGSYFTWLQQNDLRTQLLQRGKMIAEQLAPLAAPAMA---R 63
           +R+R+++L L P  L+ L+L  +F   + NDL+ QL   G  I E LA      M+   R
Sbjct: 6   LRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNR 65

Query: 64  LAPAQLERIAAQTLEQADVRAVAFLAPDRTRLA-----HAGPSMLNLPPSGGTGTQLLQR 118
            +  QL  I+      +D+     +  +  RL      H  PS + L  +     QL   
Sbjct: 66  ESIGQL--ISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVT 123

Query: 119 SGNDATRYLMPVFG--HHRDLATDAVPAEAERLLGWVEIELSHDGTLLRGYRNLFTSLLL 176
              D      P+    +  D +  +    ++ +LG++ +EL      L+ Y+ +F S ++
Sbjct: 124 RDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVM 183

Query: 177 ILACLALSGLLALRMSRTINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELAHGINRM 236
           +L C+ ++ +   R+ R +  PI  + + V++++ G L+ R+      ELD L +GIN M
Sbjct: 184 MLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSM 243

Query: 237 AETLQNAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHE 296
           A +L   HEE+QH+IDQAT D+R+ LE +EIQN+ELD+A+K A EA+RIKSEFLANMSHE
Sbjct: 244 AMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHE 303

Query: 297 IRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDS 356
           +RTPLNG++GFT L  K+E+TP Q D+LNTIE+SA+NLL IIN++LDFSK+EAGKL+L+S
Sbjct: 304 LRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 357 IPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKF 416
           IPF LR  + + +T+LA ++H K LEL   I  D P +++GDPLRL+QI+TNLV NAIKF
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 417 TREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTG 476
           T  G I +            Q+ + ++DTGIG+  +D   LFQAF QAD S++R+ GGTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 477 LGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNLP-KAHDDAEALPPQPLLGRRAAIVD 535
           LGLVI+++L+ +MGG+I   S P  GS FW  +NL    +   E    Q L G+R A V+
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVE 543

Query: 536 GHELARQALEHQLEDCGLSVSLFASYDQLLQGVQAASQAGLPFEFAVLGANLGNLSPEQL 595
            +  A Q     L +  L V    ++  L            P  + ++   +     E L
Sbjct: 544 PNSAAAQCTLDILSETPLEVVYSPTFSAL-----------PPAHYDMMLLGIAVTFREPL 592

Query: 596 GHYHQQLERYHCQ---CVVLCPTTEQALYHPYLPNGHGQLLSKPTCTRKLRRLLLELVQP 652
              H++L +        ++  P   Q        +G G  L KP    +L   L E    
Sbjct: 593 TMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH 652

Query: 653 RRPLAEGSNPNGQRRPKILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELF 712
           ++          +    ++ VDDN ANL L+  LLED+   V   ++G+ AV+  ++  F
Sbjct: 653 KQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPF 712

Query: 713 DLVLMDVQMPGMDGRACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLT 772
           DL+LMD+QMP MDG    E I    + Q     P++A+TAHAMA +K  LL +GM DYL 
Sbjct: 713 DLILMDIQMPDMDGIRACELIHQLPHQQQ---TPVIAVTAHAMAGQKEKLLGAGMSDYLA 769

Query: 773 KPISERQLAQVVMKW---TGLSLGTPQQAQAELLTNGDELKVLDPEEGLRLAAGKADLAA 829
           KPI E +L  +++++   +G+S         E++ N +    LD +  LR AAGK DLA 
Sbjct: 770 KPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPN--ATLDWQLALRQAAGKTDLAR 827

Query: 830 DMLSMLLASLDTDREAIRAARAADDRNGLIEQVHRLNGASRYCGVPQLRAACQ------R 883
           DML MLL  L   R  +      ++  GL++ +H+L+G+  Y GVP+++  CQ      R
Sbjct: 828 DMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLR 887

Query: 884 SETLLKQDNPQAQQALDELDS 904
           S T  +   P+  + LDE+D+
Sbjct: 888 SGTKEEDLEPELLELLDEMDN 908