Pairwise Alignments

Query, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

Subject, 1329 a.a., PAS domain S-box from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  282 bits (721), Expect = 1e-79
 Identities = 211/677 (31%), Positives = 353/677 (52%), Gaps = 45/677 (6%)

Query: 255  TEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKS 314
            T+D+ ++     +Q  EL  A+  A +AS+ KSEFLANMSHEIRTPLNG++GFT L+ K+
Sbjct: 665  TQDITESC----LQREELKKAKILAEQASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKT 720

Query: 315  EMTPRQLDYLNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAP 374
            +++  Q  YL+ + +S + LL IIN+ILDFSKIEAGKL LD    +L +L + T  I+  
Sbjct: 721  DLSETQAQYLSIVNQSGNALLNIINDILDFSKIEAGKLELDIDRCDLYELTEQTSDIITY 780

Query: 375  AAHAKQLELLSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHED 434
              H K LE+L  I+ D P  +  D +R+KQI+ NL+ NA KFT EG I ++    D+ E 
Sbjct: 781  EVHKKGLEMLLNIHPDIPRFIWVDSVRVKQIMVNLLGNASKFTEEGEIELQLYPIDKDEA 840

Query: 435  CAQ--LRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGE 492
              +  +R SV+DTGIG+  +    +F+AFSQ D S  ++ GGTGLGL IS RL++ M   
Sbjct: 841  SREMVIRFSVRDTGIGIKAEKQTKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMHSG 900

Query: 493  IGVDSTPGEGSQFWISLNLPKAHDDAEALPPQPLLGRRAAIVDGHELARQALEHQLEDCG 552
            + + ST G+GS F+  LN+   + +   L  + L      IVD ++  R  +E  +   G
Sbjct: 901  LQLHSTVGKGSTFYFDLNVKYEYGERITL-EEDLSVENVLIVDDNDNNRMIIERMMALRG 959

Query: 553  LSVSLFASYDQLLQGVQAASQ--AGLPFEFAVLGANLGNLSP-EQLGHYHQQLERYHCQC 609
            +S S      Q   G +A  +   G  F+  ++  ++  ++  E +    + ++R   Q 
Sbjct: 960  ISTS------QAKNGFEAIQKFVEGEKFDVVLMDYHMPYMNGIETIRKIREIVDR---QP 1010

Query: 610  VVLCPTT--EQALYHPYLPNGHGQLLSKPTCTRKLRRLLLELVQPRRPLAEGSNPN---- 663
            ++   ++  +  +       G  + L KP   +++   LL  +  ++   + ++ N    
Sbjct: 1011 IIFLHSSSDDDKILKACKELGVRKKLVKPIKLQEMYDALLS-INKKQDYRKATDQNIDLP 1069

Query: 664  ---GQRRPKILCVDDNAANLLLVKTLLEDL--GAEVLAVNNGYAAVQAVQEELFDLVLMD 718
                    K+L V+DN  N+LL KT++ +L     +L   NG  A++ +++EL  ++ MD
Sbjct: 1070 KNLFPNDGKVLIVEDNTINMLLAKTVIHNLSPATAILEAANGKEALEVMKDELPSVIFMD 1129

Query: 719  VQMPGMDGRACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISER 778
            VQMP M+G   T+ IR   N  +   + I+ALTA  +  E+   + +GM+D++ KP  E 
Sbjct: 1130 VQMPEMNGYEATQAIRKKYNKHN---ILIIALTAGNIKGEREKCMQAGMNDFIAKPFVEE 1186

Query: 779  QLAQVVMKWTGLSLGTPQQAQAELLTNGDELKVLDPEEGLRLAAGKADLAADMLSMLLAS 838
             + +++ KW    L +  +  A   ++    K L   +  +   G  DL ++M  ++L S
Sbjct: 1187 DVIKLMEKWHFNDLDSDLKIHAP--SSESPSKRLFDIDKFQAVLGFPDLESEMFQIILKS 1244

Query: 839  LDTDREAIRAARAADDRN---GLIEQVHRLNGASRYCGVPQLRAACQRSETLLKQD---- 891
              ++ E   A      +N   G+ +  H+L   +    + +L     + ET    D    
Sbjct: 1245 GKSELEKSEATFLEILQNQDEGISQAAHKLYSTASAMYLSKLSTLATKMETRKFHDFNDP 1304

Query: 892  --NPQAQQALDELDSAI 906
                + +Q L+E+  A+
Sbjct: 1305 GLAEEIKQILEEIKKAL 1321