Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1231 a.a., DNA polymerase III subunit alpha from Rhodanobacter sp000427505 FW510-R12

 Score = 1083 bits (2801), Expect = 0.0
 Identities = 608/1252 (48%), Positives = 799/1252 (63%), Gaps = 129/1252 (10%)

Query: 1    MSVPFVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAG 60
            M+V + HL +HSE+SLVD  +RIK L  A     +PAVA+TD SNM +LVKFYK    AG
Sbjct: 1    MTVRYTHLHLHSEYSLVDSTIRIKALVTACVRDGIPAVALTDDSNMFALVKFYKACTAAG 60

Query: 61   IKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWI 120
            IKPI G DLW++ AD   P  R+  L    +GY NL+ L+SR W +GQ  G  +++  W+
Sbjct: 61   IKPIGGCDLWISPADDPRPW-RLTLLCQHREGYLNLSRLVSRAWQEGQHGGRALVEAGWL 119

Query: 121  -APASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEE 179
             A AS GLIAL  G+E ++G   L    + A A L+    +FPER Y+E+ R  R  +E 
Sbjct: 120  SAGASSGLIAL-LGRESEVGRIALNQGAEAALARLRPLARLFPERLYLELTRCGREGEEN 178

Query: 180  YVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYL 239
            +  AA+ALA +LG P++A+NDVRF+ Q DF AHE RVCI +G  L DP+RPR YSDQQYL
Sbjct: 179  WNTAALALAAELGLPVLASNDVRFLTQDDFGAHEARVCIQQGRVLADPKRPREYSDQQYL 238

Query: 240  KSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEG 299
            K+ +EMA LF+D+P+A+ NTVE+AKRC ++++ GKY+LPDFP P G  +D ++R +A +G
Sbjct: 239  KTPDEMAALFADIPEALENTVELAKRCTLELKFGKYYLPDFPVPEGHDLDSHIRELARQG 298

Query: 300  LEERL--AVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNND 357
            L+ERL  A L    T  +Y+        RL+ ELD+I++MGFPGYFLIV DFI W K N 
Sbjct: 299  LKERLANAPLAADHTLADYQA-------RLERELDVIVKMGFPGYFLIVADFINWGKQNG 351

Query: 358  VPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVI 417
            +PVGPGRGSGAGSLVA+ LKITDLDPL ++LLFERFLNPERVSMPDFD+DFCMD RD VI
Sbjct: 352  IPVGPGRGSGAGSLVAWALKITDLDPLQFNLLFERFLNPERVSMPDFDIDFCMDRRDEVI 411

Query: 418  DYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE--------- 468
            DYVA  YGR+ VSQIIT+G+MAAKAV+RD  RV G  Y   DR++K+IP           
Sbjct: 412  DYVARKYGRDRVSQIITYGSMAAKAVLRDSGRVLGFGYNQVDRIAKLIPARPLDLTLSCA 471

Query: 469  VGMTLEKAYEQEEILRDF---LKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLT 525
            +G + +   E E ++++F    + DE+AR + D+ALKLE +TR  GKHAGGVVIAP+ LT
Sbjct: 472  LGRSEKAKKEPERVVKEFCELYEQDEEARALIDLALKLENLTRNAGKHAGGVVIAPSPLT 531

Query: 526  DFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKK--NL 583
            DF+P+ C+  GGG+VTQ+DKDDVEA GLVKFDFLGLRTLTII WA++ IN  +AK+  +L
Sbjct: 532  DFAPLYCEAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARRAKERPHL 591

Query: 584  PD--------------------------------------------------LNIDFIPL 593
            P                                                   L+I  +PL
Sbjct: 592  PSGHLEPRPSMASALRAAEAARDGNPAVSSLQAGEDNAEQPAAAASSMGEGPLDISQLPL 651

Query: 594  DDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDF 653
            DD  TYELL+KA+T AVFQLES GM+ ++K  KPD  ED+IALVAL+RPGP+   ++  F
Sbjct: 652  DDAPTYELLKKAQTVAVFQLESSGMQRMLKDAKPDRFEDIIALVALYRPGPMD--LIPSF 709

Query: 654  INRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRA 713
            I RKHGR E+ YP        ++P+L  TYGI++YQEQVMQ+AQ++ GY+LGGAD+LRRA
Sbjct: 710  IARKHGREEVDYPD-----PRVEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRA 764

Query: 714  MGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQT 773
            MGKKK EEMAK+R  F EG   + +  + A  IFDL+EKFAGYGFNKSH+AAY LVSYQT
Sbjct: 765  MGKKKVEEMAKERAKFREGAAKDGLSGEKADAIFDLMEKFAGYGFNKSHAAAYALVSYQT 824

Query: 774  AWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRI 833
            AWLKTHYPA FMAA +S+DM NTDKVV  ++E R++ + +  PDVN S++ F       I
Sbjct: 825  AWLKTHYPAEFMAATISSDMDNTDKVVTFLDESRAIGIAVQPPDVNASEYMFVAIEPRTI 884

Query: 834  VYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRL 893
             YGLGAIKGVG+G  EAIV  RA  G + DL DFC R+D  ++N+R L+ALV SGALD L
Sbjct: 885  QYGLGAIKGVGQGACEAIVAERAH-GRYTDLADFCRRVDPTKLNRRVLEALVLSGALDAL 943

Query: 894  GPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVY 953
                             NRA+L+  L +AIKAAEQ      SG  D+FG+    A   + 
Sbjct: 944  A---------------ANRASLMLQLPDAIKAAEQHLRDRQSGQNDMFGAAMGNATPVLK 988

Query: 954  ANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFA-------RQRIVDLKPSR 1006
                 V E  L+++L+GE+DTLG YL+GHP D ++ E+ + +         R    KP +
Sbjct: 989  IELPTVPEWPLEQKLQGERDTLGHYLSGHPTDPWKDELAQLSTCPLGEIADRYQPPKPRK 1048

Query: 1007 ETQ--------------TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMA 1052
                             T+AGM+ A+R    K+GD   FV L+D SG IE S F + +  
Sbjct: 1049 NDHDDNNRFRRGPDTPWTVAGMVTAVR----KRGDSDAFVRLEDGSGLIEVSFFGELYQQ 1104

Query: 1053 AQSLLQTDAMVVVEGEVSNDDFS-GGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGD 1111
               LL  D M+VV+G +  D+FS GG +LR +   ++ DA  + A  L+LK+  + +   
Sbjct: 1105 IAPLLTRDEMLVVDGGLRIDEFSGGGFQLRARSACSLADACRRHARLLQLKL--NGIGPG 1162

Query: 1112 RLKWLGELITRHRGA-CPITLE-YTGSDAKAMLQFGEQWAIDPADGLIQALR 1161
             ++ L   +  +RG    +TL  Y    A+A  + GE W +D    L++A+R
Sbjct: 1163 FVEQLQHALAGYRGGRTSVTLHGYRNRHAQADFELGEAWRVDAIPDLLRAVR 1214