Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1155 a.a., DNA polymerase III subunit alpha from Xanthobacter sp. DMC5

 Score =  799 bits (2063), Expect = 0.0
 Identities = 475/1121 (42%), Positives = 663/1121 (59%), Gaps = 67/1121 (5%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            F+HL VHS +SL++G + +  LA        PA+A+TD  N+   ++F +   G+GI+PI
Sbjct: 7    FIHLHVHSSYSLLEGALSVGKLADLAKADYQPAIALTDTGNLFGALEFSEKMSGSGIQPI 66

Query: 65   CGADLWLAGADPEAPLS-------RICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQR 117
             G  L L   +P  P         R+  LA D  G+RNL  L+SR + +        +  
Sbjct: 67   PGVSLALDLPEPAGPRGGLRPRKPRVVLLAKDDAGWRNLMRLVSRSFLETASEDEPRILP 126

Query: 118  EWIAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARD 177
            EW+A A++GLI L+ G  G +  A++ G  + A   L     +F +R YVEVQR     +
Sbjct: 127  EWLAEANDGLICLTGGPSGPLDRAIVGGHPEMAADRLDLLTSLFGDRLYVEVQRHGADPE 186

Query: 178  EEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQ 237
                 A + LA   G PLVA N+  F  ++D++AH+  + I EG  L +  R R  ++ +
Sbjct: 187  RLAEPALLDLAYTKGVPLVAANEPFFAAKSDYEAHDGLLAIAEGRLLSEGDRRRLTAEHR 246

Query: 238  YLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPN--GMGIDDY---- 291
            + K+  EM ELF+DLP+A ANTVEIAKRC  +V+  K  LP F T +    G D      
Sbjct: 247  F-KTRAEMLELFADLPEATANTVEIAKRCAYRVRTVKPILPRFTTADEKAEGSDPLEAEA 305

Query: 292  --LRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349
              L+  A EGL  RLA   P    P  +E    Y DRL +E+ +I +M FPGYFLIV DF
Sbjct: 306  AELKRQAEEGLAARLAKHGP---APGLDEA--AYHDRLAYEVSVITKMKFPGYFLIVSDF 360

Query: 350  IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409
            IKWAK +D+PVGPGRGSGAGSLVAY L+ITDLDPL + LLFERFLNP+RVSMPDFDVDFC
Sbjct: 361  IKWAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVDFC 420

Query: 410  MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469
             + RD VI YV E YGR  V+QIITFGT+ A+ V+RDV RV    YG  D+L K++P   
Sbjct: 421  QERRDEVIRYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNP 480

Query: 470  G--MTLEKAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDF 527
               +TL++A E E  L+     +E  +  +D+A+KLEG+ R    HA G+VI   +L + 
Sbjct: 481  ANPVTLKQAIEDEPRLQAARDQEEVVKRAFDIAVKLEGLNRHASTHAAGIVIGDRQLHEL 540

Query: 528  SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLN 587
             P+  D +    VTQ++   VE AGLVKFDFLGL+TLT I+ A++++++        +L+
Sbjct: 541  VPLYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIEKAVKLVHQRGI-----ELD 595

Query: 588  IDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647
            I  IPLDD KTY +L K ET  VFQ+ES GM+  +  +K D +ED++ALVAL+RPGP+ +
Sbjct: 596  ISKIPLDDAKTYHMLGKGETVGVFQVESAGMRRALVDMKADRIEDIVALVALYRPGPMAN 655

Query: 648  GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707
              +  + + KHGRA       DY +  L+P L  T+G+I+YQEQVMQIAQ MAGY+LG A
Sbjct: 656  --IPVYCDCKHGRAT-----PDYLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLGEA 708

Query: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767
            D+LRRAMGKK   EM KQR  F+ G     I+   A  IFDL+ KFA YGFNKSH+AAY 
Sbjct: 709  DLLRRAMGKKIRAEMEKQRERFVSGAAGRGIEKAQADTIFDLLAKFADYGFNKSHAAAYA 768

Query: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTV 827
            LV+YQTAWLK +YP  F+AA ++ D  NTDK+    +E + + + +  P++N S  +F V
Sbjct: 769  LVAYQTAWLKANYPTEFLAASMTLDKGNTDKLAEFRQEAQRLGIEVVPPNINLSAREFGV 828

Query: 828  NNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRS 887
              DG+I+Y + AIKGVGE  VEA+V AR    PF+   DF  R+ +K VNKRTL++L+ +
Sbjct: 829  -KDGKIIYAMAAIKGVGEAAVEALVAARGD-RPFRSFADFATRLPVKLVNKRTLESLMAA 886

Query: 888  GALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGS-MFD 946
            G  D L               + NRA   +A+   +  A++    A SG  D+FGS    
Sbjct: 887  GCFDVL---------------EKNRARAFAAIEPIVAEAQRVEANAQSGQNDMFGSGPAA 931

Query: 947  AADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSR 1006
            AA + +     +       ERL+ E D++G +LTGHP+D+Y   +++   Q   D   + 
Sbjct: 932  AASLPI----PEASPWLPSERLQKEYDSIGFFLTGHPLDDYAEALKKMRVQSFADFSRAV 987

Query: 1007 ETQTIAGMIIALRVMK----NKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQ--TD 1060
             +   AG + A  V K     K G +MG V L D SG  EA +F++     + LL+  T 
Sbjct: 988  RSGAAAGRLAATVVSKQERRTKSGTRMGIVGLSDPSGHYEAVIFSEGLAHYRDLLEPGTP 1047

Query: 1061 AMVVVEGEVSNDDFSGGLRLRVKQVMTMEDARTKLAESLRL 1101
             +++V  E++ +D    +R+R+     ++    K  + LR+
Sbjct: 1048 LLMMVAAEMNGED----VRVRINSCEKLDPVTAKHQKGLRI 1084