Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1099 a.a., Error-prone DNA polymerase from Xanthobacter sp. DMC5

 Score =  322 bits (825), Expect = 1e-91
 Identities = 283/1100 (25%), Positives = 475/1100 (43%), Gaps = 105/1100 (9%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            +  L   S FS + G      L +   G+ +  + I D++ +  +V+ Y     + ++ +
Sbjct: 6    YAELAAASHFSFLRGASAPAHLVRTAVGLGLDGLGIADRNTVAGVVRAY-----SALEDL 60

Query: 65   CGADLWLAGADPEAPLSR-------------------------ICFLAMDPKGYRNLTEL 99
               D  L   DPEA   R                         I        G+  L  L
Sbjct: 61   RALDEDLEADDPEADAKRAVAARARAFRLVTGARLVFCDGTADIIAYPSTRAGWGRLCRL 120

Query: 100  ISRGWTDGQRNGLVILQREWIAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMG 159
            ++ G    ++    +   + +A   + ++ +  G++G     LL+   + A   +  W+G
Sbjct: 121  LTTGNRRAKKGDCHLSLADLLADVRDLMLIVMPGEDGSDLPPLLSRLGEAAPGAV--WLG 178

Query: 160  MFPERFYVEVQRTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIG 219
                     V       D   + A  A+A     PL+A NDV +    + D  +   C+ 
Sbjct: 179  ---------VDMPFSGADRRRLAALKAIARTACVPLLAVNDVLYATPEERDLQDILTCVR 229

Query: 220  EGWTLDDPRRPRCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPD 279
            E  T+ +  R    + +++LK A EMA LF D P+A+A +  +  R +  ++  KY  P+
Sbjct: 230  ESTTIAEAGRRLLANAERHLKPAAEMARLFRDAPEAVAESGALLARIDFTLKELKYDYPE 289

Query: 280  FPTPNGMGIDDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGF 339
             P P G     +L     E L  R A +   E  P   EK       L+ EL +I ++ +
Sbjct: 290  EPVPPGWTPQAWL-----EELTWRCAAVRYPEGVPEKVEKL------LRDELALIRKLKY 338

Query: 340  PGYFLIVMDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERV 399
              YFL + D +++A++  + +  GRGS A S V YVL IT +DP   DLLF RF++ ER 
Sbjct: 339  APYFLTIHDIVRFAESQGI-LCQGRGSAANSAVCYVLGITAVDPADNDLLFARFISEERR 397

Query: 400  SMPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLAD 459
              PD DVDF    R+ VI ++ + YGR+    + T      ++ +RDV +  G +  +  
Sbjct: 398  EPPDIDVDFEHARREEVIQHIYDKYGRHRAGIVATVIHYRPRSAIRDVGKALGLTEDVTA 457

Query: 460  RLSKMIPFEVGMTLEKAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVI 519
            RL+       G  +  A+ +E  L      +   R   ++A +L G  R   +H GG V+
Sbjct: 458  RLASTQWGSWGRDISDAHIREAGLD---PSNPFIRRAVELAGRLMGAPRHLSQHVGGFVL 514

Query: 520  APTKLTDFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQA 579
            A  +L D  PI           ++DKDD++  GL+K D L L  LT I+ A++++   + 
Sbjct: 515  ARGRLDDTVPIGNAAMADRTFIEWDKDDIDVLGLMKVDVLALGMLTCIRKALDLMRNHEG 574

Query: 580  KKNLPDLNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVAL 639
                 D  +  +P      Y +L + ++  VFQ+ESR    ++ +LKP    DL+  VA+
Sbjct: 575  ----IDWGLADVPSGQADVYAMLSRGDSIGVFQVESRAQINMLPRLKPQKFYDLVIQVAI 630

Query: 640  FRPGPLQSGMVDDFINRKHGRAELAYPHSDYQY---EGLKPVLAPTYGIILYQEQVMQIA 696
             RPGP+Q  MV  ++ R+ G  ++ YP         + L  VL  T G+ L+QEQ M++A
Sbjct: 631  VRPGPIQGDMVHPYLRRRSGLEKVDYPSPAPHLGDKDELHSVLDKTLGVPLFQEQAMKLA 690

Query: 697  QVMAGYTLGGADMLRRAMGK-KKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAG 755
             V A ++   A+ LRRAM   +    + +     +E  VA     D A   F+ ++ F  
Sbjct: 691  MVAARFSAKEANRLRRAMATFRNLGTIQEFESMMVERMVARGYKRDFAARCFEQIKGFGS 750

Query: 756  YGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDA 815
            YGF +SH+A++  + Y ++++K  +PA F  A+L+A          +V +     + +  
Sbjct: 751  YGFPESHAASFAKLVYISSYIKCRHPAAFACALLNAQPMGFYAPAQIVRDAHEHGVEVRP 810

Query: 816  PDVNFSDFKFTV--NNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDL 873
             DVNFS    T+   +DG +   LG  +  G         A A+ GPF  + D   R  L
Sbjct: 811  IDVNFSHHDNTLERRDDGALALRLGFRQVDGFHAEWGERLAAARSGPFASIEDLARRARL 870

Query: 874  -KRVNKRTLDA-LVRSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAH 931
              R  K   DA   RS  LDR    +H                              A  
Sbjct: 871  PTRAVKLLADADAFRSMDLDRRAALWH------------------------------ARR 900

Query: 932  TADSGHVDLFGSMFDAADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEI 991
              D   + LF +  DA ++ V      +  +   E +  +  T+ L L GHP+ E     
Sbjct: 901  LPDDDALPLFAAA-DARELGV-EEEVTLPRMARSEHIVADYQTVRLSLKGHPMGELRDHF 958

Query: 992  RRFARQRIVDLKPSRETQTI--AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADA 1049
            R+       +    ++   +  AG+++   V +     K  F+T++D +G     L+   
Sbjct: 959  RKERILTCAETSALKDGAFVRNAGVVL---VRQRPGNGKAIFITIEDETGITNIVLWERT 1015

Query: 1050 FMAAQSLLQTDAMVVVEGEV 1069
                +  +    +++VEG +
Sbjct: 1016 LERFRREVMGARLLLVEGRI 1035