Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

 Score =  350 bits (897), Expect = e-100
 Identities = 294/1080 (27%), Positives = 486/1080 (45%), Gaps = 110/1080 (10%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            +  L   S FS   G      L +        A+AITD+  +  +V+ ++ A    +  I
Sbjct: 3    YAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELPLI 62

Query: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPAS 124
             G+++ +          ++  L  D  GY++L  LI+      ++    +L+ ++  P  
Sbjct: 63   IGSEVRIDNGP------KLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPLP 116

Query: 125  EGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYVHAA 184
             GL+AL   ++ D         Q +++ L +     F ER ++ V       D  ++   
Sbjct: 117  -GLLALWVAEDSDT--------QADSQWLRRT----FGERLWLAVHLHCGQNDARHLEQR 163

Query: 185  VALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSAEE 244
            + LA  L  P VA  DV    +      +T   I     + +       + +++L+S + 
Sbjct: 164  LQLAASLHLPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDA 223

Query: 245  MAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGLEERL 304
            +A L+      +  T  IA+RC   +   +Y  P    P G     +LR V  EG+ +R 
Sbjct: 224  LAALYPQ--PLLDETETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKR- 280

Query: 305  AVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGPGR 364
               WP+       ++       +  EL++I ++G+  YFL V D +++A++  + +  GR
Sbjct: 281  ---WPQGVDAKTAQQ-------INSELELISELGYESYFLTVHDIVQFARSRSI-LCQGR 329

Query: 365  GSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEAY 424
            GS A S V Y L IT++DP    +LFERFL+ ER   PD DVDF  + R+ V+ YV + Y
Sbjct: 330  GSAANSAVCYALGITEIDPSLTSMLFERFLSRERNEPPDIDVDFEHERREEVLQYVFQRY 389

Query: 425  GRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
            GR   +      +  A   VRDVA    K+ GL       +    G   + A   + +  
Sbjct: 390  GRTRAALTAVVSSYHASGAVRDVA----KALGLPPDQINALADCCGRWSDAAPPLDRLRE 445

Query: 485  DFLKGDED-AREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQF 543
                 D    R +  +  +L G  R   +H GG VI+   L    P+         + Q+
Sbjct: 446  GGFDPDSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENAAMAERTIIQW 505

Query: 544  DKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYELLQ 603
            DKDD++A GL+K D L L  L+ I+   +++ R + +    DL +  IP +D  TY ++ 
Sbjct: 506  DKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNR----DLALATIPKEDPATYAMIS 561

Query: 604  KAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAEL 663
            KA+T  VFQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q GMV  ++ R++   E 
Sbjct: 562  KADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVAIVRPGPIQGGMVHPYLRRRNKEEET 621

Query: 664  AYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEM 722
             YP  +     LK VL  T GI L+QEQVMQIA V A Y  G AD LRR+M   K+   +
Sbjct: 622  TYPSPE-----LKVVLERTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKRHGGL 676

Query: 723  AKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPA 782
               +     G + N      A  IF+ ++ F  YGF +SH+A++ L++Y + WLK H PA
Sbjct: 677  EPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPA 736

Query: 783  PFMAAVLSA---DMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNN-DG---RIVY 835
             F  A++++     ++ D++   +++ R  +L++   DV  SD+  ++   DG    I  
Sbjct: 737  AFACALINSWPMGFYSPDQI---LQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIRM 793

Query: 836  GLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGP 895
            GL  I G  E     I  AR +   F D+ D  +R  L   + R    L  +GAL  L  
Sbjct: 794  GLRMISGFREEDARRIEAARHRRA-FSDIADLDDRAGL---DARAQALLADAGALRALAG 849

Query: 896  HFHD---EIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDV 952
            + H    E+   H  +          L   + + ++A     S                 
Sbjct: 850  NRHKARWEVAGVHKQL---------GLFAGLPSPDEAVVELPSP---------------- 884

Query: 953  YANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRR---FARQRIVDLKPSRETQ 1009
                      T+ E L  +  T+G  L  HP+     E+R+    + Q ++ ++  R   
Sbjct: 885  ----------TVGEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNV- 933

Query: 1010 TIAGMIIALRVMKNKKGDKMG--FVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEG 1067
            ++AG++      + + G   G  FVTL+D  G +   ++ D     +  L    ++ V+G
Sbjct: 934  SVAGLVTG----RQRPGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDG 989