Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1117 a.a., Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  327 bits (837), Expect = 4e-93
 Identities = 301/1137 (26%), Positives = 491/1137 (43%), Gaps = 148/1137 (13%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIK-- 62
            +  L   + FS   G    + + +    +   A+AITD+ ++  +V+ +    G   K  
Sbjct: 35   YAELHCLTNFSFQRGASTPEEMVERAYQLGYKALAITDECSVAGIVRAHVCLRGMEHKLD 94

Query: 63   ------------PICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISR-------- 102
                        P       L G++ +    R+  +A D +G+ NL E I+         
Sbjct: 95   EYEREHPDEPKIPRNPTFRLLFGSEFQFERFRLVVIANDTEGWGNLCEFITAARNTELPK 154

Query: 103  -----GWTDGQRNGLVILQREWIAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDW 157
                 GW +     L   Q  ++   + G     A  +  +   LLA R           
Sbjct: 155  GEYRVGWEESDVASLQHCQILFVPNRNPG----GAMDKATLHEDLLAAR----------- 199

Query: 158  MGMFPERFYVEVQRTNRARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVC 217
              ++ E  ++ V+  N   D+ ++   + + ++ G PLVA  DV    ++    H+    
Sbjct: 200  -ALYGENLWLAVELFNELDDDLWLVTLMEVGEQAGVPLVAAGDVHMHARSCKPLHDVLTA 258

Query: 218  IGEGWTLDDPRRPRCYSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFL 277
            + EG T+ +       + Q++L+    +AE+   L   + NT+ +A RCN   ++ +   
Sbjct: 259  VREGKTVAECGFALQSNAQRHLRPRMRLAEI--HLRRMLENTLAVAGRCNFDPEVIR--- 313

Query: 278  PDFPTPNGMGIDDYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLD--------RLKF 329
                       ++Y   +   G +E  A    ++T   +E  R  Y +        +++ 
Sbjct: 314  -----------ENYKYPLETLGSDETPAQTLVRKT---WEGARGRYPEGIPDKVRAQVQK 359

Query: 330  ELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLL 389
            ELDIII + +  +FL V + + +A++  + +  GRGS A S V + L IT +DP    LL
Sbjct: 360  ELDIIIDLKYEMFFLTVENIVSFARSQKI-LCQGRGSSANSAVCFCLGITAIDPTKGHLL 418

Query: 390  FERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVAR 449
            FERFL+ ER   PD DVDF    R+ VI Y+   YGR+  +         +++ +RDV +
Sbjct: 419  FERFLSRERHEPPDIDVDFEHQRREEVIQYIYAKYGRHRAAIAAVVICYRSRSALRDVGK 478

Query: 450  VQGKSYGLADRLSK----MIPFEVGMTLEKAYEQEEILRDFLKGDEDAREIW-DMALKLE 504
              G    L D  +K         +G  L +A  +  ++ D LK        W +M  KL+
Sbjct: 479  AIGIDERLIDEFAKDHYWFDDTVLGEQLRQAQARVGVVEDELK-----LVHWIEMTQKLK 533

Query: 505  GVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTL 564
            G  R   +H GG V+  T+LT   P+         V Q++KDD+EA G++K D L L  L
Sbjct: 534  GFPRHLSQHVGGFVLTHTRLTRLVPVEKASMKDRSVIQWEKDDLEAMGMLKVDVLALGML 593

Query: 565  TIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKK 624
            + I+  +E +NR +       + +  IP DD+K ++++  A+T  VFQ+ESR    ++ +
Sbjct: 594  SAIRRGLEHMNRWRGS----TIEMHQIPNDDQKVFDMICDADTIGVFQIESRAQMSMLPR 649

Query: 625  LKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYG 684
            LKP   EDL+  VA+ RPGP+Q GMV  ++ ++  R     P   Y+ E L+  L  T G
Sbjct: 650  LKPRTYEDLVIEVAIVRPGPIQGGMVHPYLKQRE-RVRKGLP-IHYEKEELREALERTLG 707

Query: 685  IILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEMAKQRGGFIEGCVANNIDADLA 743
            I ++QEQVMQIA + A +T   AD LRRAM   K+   + K     + G   N   A  A
Sbjct: 708  IPIFQEQVMQIAMIAAKFTADEADQLRRAMAAWKRKGGLGKFHDKLVNGMTLNGYKASFA 767

Query: 744  GNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLV 803
              IF  V  F  YGF +SH+A++ L+   ++WLK + PA F+AA+L +          LV
Sbjct: 768  EAIFKQVMGFGDYGFPESHAASFALLVTVSSWLKNYEPACFLAALLDSQPMGFYSPSQLV 827

Query: 804  EEVRSMKLRLDAPDVNFSDFKFTV-----------------------NNDGRIVYGLGAI 840
            ++ R   + +   DV  SDF  T+                        N   +  GL  I
Sbjct: 828  QDARRHGVEVRPVDVTRSDFDTTLEAREPDAPRPSGIDERYADRLGNENQPAVRLGLNRI 887

Query: 841  KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHDE 900
             G   G VE +++ARA   PF    D   R +L+    + + AL  + AL  L  H   +
Sbjct: 888  AGFSAGGVERLLKARA-AAPFTSTEDLALRAELE---GKDMAALAAADALMSLSGHRRQQ 943

Query: 901  IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANHRKVR 960
            +       D        AL   +   EQA              +  AA            
Sbjct: 944  V------WDATAQRRAPALLRGVPINEQAL-------------LLPAASEG--------- 975

Query: 961  ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTIAGMIIALRV 1020
                 E + G+  +L L L  HP+      + R       +L+     QT     I    
Sbjct: 976  -----EEIVGDYASLRLTLRRHPLALLRPRLARMKLMSAAELRSVPNGQTARACGIVKGR 1030

Query: 1021 MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGG 1077
             + +  +   FVTL+D +G +   +++    A +  L    ++ V+G    DD +GG
Sbjct: 1031 QRPQTANGTIFVTLEDETGNVNVIVWSHVIEAWREPLLKSHLLAVQGTWQRDDETGG 1087