Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1172 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Variovorax sp. SCN45

 Score =  986 bits (2550), Expect = 0.0
 Identities = 562/1189 (47%), Positives = 743/1189 (62%), Gaps = 71/1189 (5%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            FVHLR+H+EFS+VDG  RI    KA      PA+AITD +N+   VKFYK   G G+KP+
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEAIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61

Query: 65   CGADLWLAGADPE-APLSRICFLAMDPKGYRNLTELISRGWTDGQRNGL--VILQREWIA 121
             GA++++ G   E   L+RI  L    +GY NL+EL++R WT     G      + EW+ 
Sbjct: 62   IGAEIFIDGLGKEPGALTRIVLLVQSMEGYLNLSELLARAWTQNVARGQSQAACKLEWVQ 121

Query: 122  PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYV 181
              S GLIALS  + G +G  LL G+ + A  L     G+FP RFY+E+QR  R  DE +V
Sbjct: 122  ELSGGLIALSGAQAGPLGQPLLQGQGERAAELALQLAGIFPHRFYIELQRAGRPEDEPHV 181

Query: 182  HAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKS 241
             AAV LA +L  P+VAT+ V+F  + D++AHE RVCI EG  L +PRR R ++++QY KS
Sbjct: 182  IAAVQLAARLKLPVVATHPVQFAAREDYEAHEARVCISEGEILGNPRRVRRFTEEQYFKS 241

Query: 242  AEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPN-----GMGIDDYLRHVA 296
              EM  LF+D+P A+ANTVEIAKRCN+ + LGK  LPDFPTP       M IDD+ R  +
Sbjct: 242  TAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRMPIDDFFRQES 301

Query: 297  HEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNN 356
             EGLE RL  L+P E     E +R  Y++RL+FE++ I+ MGFPGYFLIV DFIKWAK N
Sbjct: 302  FEGLEMRLRHLYPDEA--KREAQRARYVERLEFEINTILNMGFPGYFLIVGDFIKWAKEN 359

Query: 357  DVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRV 416
              PVGPGRGSGAGSLVAY LKITDLDPL Y LLFERFLNPERVSMPDFD+DFC   RDRV
Sbjct: 360  GCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQGNRDRV 419

Query: 417  IDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKA 476
            IDYV + YGRNAVSQI TFGTMAA+A +RDV RV   SY   D +SK+IP + GM++   
Sbjct: 420  IDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNKPGMSVTLQ 479

Query: 477  Y---------------EQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAP 521
            Y               E E  L + ++ +E+ R + ++A KLEG+TR  G HAGGV+IAP
Sbjct: 480  YPPEKKIEGDKNNYAIEMEPQLAERIEKEEEVRMLVELAQKLEGMTRNIGMHAGGVLIAP 539

Query: 522  TKLTDFSPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAME-IINREQAK 580
             KLTDF P+         V+Q+DKDDVEA GLVKFDFLGL TLTI++ A E I+ R + +
Sbjct: 540  GKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQ 599

Query: 581  KNLPDLNIDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALF 640
            +N    N   IPL+D  TY L  +  T AVFQ ESRGM+ ++K  +P  LEDLIAL AL+
Sbjct: 600  ENFAFEN---IPLNDAATYRLFSEGTTEAVFQFESRGMQGMLKDARPTRLEDLIALNALY 656

Query: 641  RPGPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMA 700
            RPGP+   ++  F+ RKHGR E+ YPH       +  +L+ TYGI++YQEQVMQ AQ++ 
Sbjct: 657  RPGPMD--LIPSFVARKHGREEVEYPH-----PAVAEMLSETYGIMVYQEQVMQTAQILG 709

Query: 701  GYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCVA-NNIDADLAGNIFDLVEKFAGYGFN 759
            GY+LGGAD+LRRAMGKKK EEMA+ R  F  G +A + I  D A  IFDL+EKFAGYGFN
Sbjct: 710  GYSLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIVQDKADEIFDLMEKFAGYGFN 769

Query: 760  KSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEV-RSMKLRLDAPDV 818
            KSH+AAY L++Y T WLK HY A F  A ++ +M +TDK+ +L E+  ++  +  + PDV
Sbjct: 770  KSHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDV 829

Query: 819  NFSDFKFTVNNDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNK 878
            N  +++F    D  I YGLGA+KG G+  VEA+V AR +GGPFK LFDFC RID +R+NK
Sbjct: 830  NRGNYRFEPVTDRVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINK 889

Query: 879  RTLDALVRSGALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHV 938
            RT++AL+++GA D                I  NRA+L++++  A + A   A  A++  V
Sbjct: 890  RTVEALIKAGAFDA---------------IQQNRASLIASVDRAFEFA--IATAANASQV 932

Query: 939  DLFGSMFDAADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQR 998
            D+FG   +        +        +KERL  EK  +G YL+GH  DE   E+RRF ++ 
Sbjct: 933  DIFGDC-EHGSATAEPDLVDATPWGVKERLTLEKTAVGFYLSGHLFDEVSHEVRRFCKRE 991

Query: 999  IVDLKPSRETQTIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQ 1058
            I DL  SR+ Q IAG++   RV+  ++G ++    LDD+S  I+A+       A ++ L+
Sbjct: 992  IGDLLDSRDQQVIAGIVSDFRVINGQRG-RLAIFKLDDKSDAIDATADEALINANRNTLK 1050

Query: 1059 TDAMVVVEGEVSNDDFSGGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRL----- 1113
             D +V+V G +         R +V+QV  +  AR +  + LR+ V   A    RL     
Sbjct: 1051 DDELVIVSGRLQPARGGFEARFQVQQVWDLATARCRFGKFLRVAVNGKAPDIARLIKDFP 1110

Query: 1114 -----KWLGELITRHRGACPITLEYTGSDAKAMLQFGEQWAIDPADGLI 1157
                   +G+LI       P+ L      A+  LQ GE+    P D  +
Sbjct: 1111 PRTEQTEVGDLIQ----GLPVRLSMARGGAQVELQLGERAKFFPTDAAL 1155