Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1180 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Sphingobium sp. HT1-2

 Score =  732 bits (1889), Expect = 0.0
 Identities = 464/1173 (39%), Positives = 650/1173 (55%), Gaps = 80/1173 (6%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            FV LR+ S F++++G +  K +AK    +  PA AITD++ +   + F     G G++PI
Sbjct: 6    FVPLRIFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDGCKGEGVQPI 65

Query: 65   CGADLWLA--GADPEAPLSR--ICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWI 120
             GA L +   G    AP     I   A D  GY N+  L+S    D     +  +  + +
Sbjct: 66   VGAMLGVVRPGRPSNAPAVHDWIALYAQDAGGYDNICALVSMAHLDRPLEEVPHVTLDML 125

Query: 121  APASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEY 180
               ++G+IAL+AG EG I       + D A A       +FP+R YVE+ R     + + 
Sbjct: 126  EGRTDGVIALTAGGEGAIARLFAEDQPDAALAYADRLQALFPDRLYVEICRRLDPVEGKA 185

Query: 181  VHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLK 240
                + LA     PLVATN   F +     AH+  +CI +G  ++ P R R  S   ++K
Sbjct: 186  EPQLLDLAYDRNLPLVATNPTCFAEPEFHAAHDVMLCIADGAYVETPDR-RTSSPDAWMK 244

Query: 241  SAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTP-NGMGIDDYLRHVAHEG 299
             A EM  LF DLP+A+ANT+ +A+RC +     K  LP       G GI   LR  +  G
Sbjct: 245  PAAEMKRLFEDLPEALANTLVVAQRCAVMAPKRKPILPSLAGDIEGEGI--MLRDQSIAG 302

Query: 300  LEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVP 359
            LE RL     ++     +E RQ Y +RLKFE+DIIIQMGFPGYFLIV DFIKWAK++D+P
Sbjct: 303  LEARL-----EKAGIIADEARQPYFERLKFEMDIIIQMGFPGYFLIVADFIKWAKDHDIP 357

Query: 360  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDY 419
            VGPGRGSGAGSLVA+ L ITDLDPL   LLFERFLNPERVSMPDFD+DFC   R  VI Y
Sbjct: 358  VGPGRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRY 417

Query: 420  VAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV--GMTLEKAY 477
            V + YG + V+QIITFG + A+AV++D  RV   SYG  DRL+K++P       TLE++ 
Sbjct: 418  VQQKYGSDHVAQIITFGKLKARAVLKDTGRVMQMSYGQVDRLAKLVPNHPTDPWTLERSL 477

Query: 478  EQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 537
                  +     D   + + D A+KLEG  R +  HA GVVI    L+   P+  D    
Sbjct: 478  NGVAEFKAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYRDPRSD 537

Query: 538  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRK 597
              VTQFD   VE AGLVKFDFLGL+TL++++ A++++     K     +++D +  DD K
Sbjct: 538  MPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQLL-----KGRGVTVDLDTLAWDDAK 592

Query: 598  TYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 657
             YELLQ+ +T  VFQLES GM++ +  ++P    D+IALV+L+RPGP+ +  +  F  RK
Sbjct: 593  VYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDN--IPMFGRRK 650

Query: 658  HGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 717
            +G+ E+ YPH       LKP+L  TYGI +YQEQVMQ AQ++AGY+LG AD+LRRAMGKK
Sbjct: 651  NGQEEIEYPHI-----LLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKK 705

Query: 718  KPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 777
               EM  QR  F+EGC  ++I    A  +FDL++KFAGYGFNKSH+AAY L++YQTAWLK
Sbjct: 706  IKAEMDAQRLRFVEGCAKSDIKPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLK 765

Query: 778  THYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTV------NNDG 831
             HYPA F A  ++ D+H T+K+ V V+++R M +    PD+N S+  FTV       +D 
Sbjct: 766  AHYPAEFYAGSMAFDIHLTEKLTVFVDDMRRMGMTCLPPDLNQSEADFTVEAVPFEGDDP 825

Query: 832  R----IVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRS 887
            R    + Y LG +KGVGE  +E +V  R   GPFK L D  +RI+ + +N+R L++L  +
Sbjct: 826  RLGFAVRYALGGLKGVGEKAMEQLVAEREANGPFKHLDDLADRIEPRLLNRRQLESLAAA 885

Query: 888  GALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDA 947
            GA D                I  +RA + +A    +  A  AA   +SG   LFG     
Sbjct: 886  GAFD---------------TIHADRAGVHAAAETLLSVAASAAQARESGQGGLFG----- 925

Query: 948  ADVDVYANHRKVR-----ELTLKERLKGEKDTLGLYLTGHPIDEYE--TEIRRFARQRIV 1000
               DV   H  VR       T+ +R+  EK+  G Y + HP+D +    + R       +
Sbjct: 926  ---DVETAHEDVRIPPHQAWTVSDRMAQEKEAFGFYFSAHPVDRFRHLADARGAKSYGEI 982

Query: 1001 DLKP-------SRETQTIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF-ADAFMA 1052
              +P        R    +A M+  +R  + ++G +    T  D+SG+ +AS F  DA   
Sbjct: 983  CSQPMGMPNAEGRVMGIMAAMVEDVRWRETRRGARYANATFSDQSGQFQASCFDEDACKQ 1042

Query: 1053 AQSLLQTDAMVVVEGEVSNDDFSGGLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDR 1112
             + L +     ++  E+  D   G    RV  V  ME  R ++A   R+++  D    + 
Sbjct: 1043 IEELAREGDCALLHVEL--DRLPGEETPRV-TVRRMEPFR-EIANVSRMELVLDIEMVEA 1098

Query: 1113 LKWLGELITRHRGA-CPITLEYTGSDAKAMLQF 1144
            +  L  +++  RG  C + +     D KA   F
Sbjct: 1099 VAKLAAILSGSRGGRCEVFVRAPIGDGKAARVF 1131