Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1033 a.a., error-prone DNA polymerase from Pseudomonas putida KT2440

 Score =  360 bits (923), Expect = e-103
 Identities = 301/1084 (27%), Positives = 485/1084 (44%), Gaps = 97/1084 (8%)

Query: 1    MSVP-FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGA 59
            M+ P +  L   S FS   G      L +        A+AITD+  +  +V+ ++ A   
Sbjct: 8    MNTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVH 67

Query: 60   GIKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREW 119
             ++ I G+++ L          ++  L  +  GY+NL  LI+R     ++ G   L R+ 
Sbjct: 68   QLRLIVGSEVQLCDGP------KLVLLVENLTGYQNLCALITRARRRAEK-GAYQLFRDD 120

Query: 120  IAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWM-GMFPERFYVEVQRTNRARDE 178
            +    +GL+AL                 D  +     W+  +F ER ++ V     + D 
Sbjct: 121  LLLHHQGLLALWVAA-------------DSGDTATGAWLRSVFAERLWLAVHLHRGSDDA 167

Query: 179  EYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQY 238
              +    ALA  +G   VA  DV    +      +    I +   + +  R    + +++
Sbjct: 168  VRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGRFLFANGERH 227

Query: 239  LKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHE 298
            L+S  ++AEL+    D +A T+ IA+RC   +    Y  P    P G     +LR +  +
Sbjct: 228  LRSQAQLAELYP--LDLLAETLVIARRCQFDLSELNYQYPRELVPEGHTPASWLRELCEQ 285

Query: 299  GLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDV 358
            G+  R    WP   +           D L  EL +I ++G+  YFL V D + +A++  +
Sbjct: 286  GMPLR----WPDGPSGKVR-------DVLAKELGLIEELGYESYFLTVHDIVAFARSQRI 334

Query: 359  PVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVID 418
             +  GRGS A S+V +VL IT+LDP+ + LLFERFL+ ER   PD DVDF  D R+ VI 
Sbjct: 335  -LCQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEHDRREEVIQ 393

Query: 419  YVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYE 478
            YV   YGR+  +      T  A   VRDVAR  G      D L+K      G   ++  +
Sbjct: 394  YVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKC----CGRWSDRIPD 449

Query: 479  QEEILR-DFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGG 537
             + +    F  G    R +  +A +L G  R   +H GG VI+   L    P+       
Sbjct: 450  DQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVPVENAAMPE 509

Query: 538  GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRK 597
              V Q+DKDD++  GL+K D L L  L+ ++   + +   + +     L +  IP +D  
Sbjct: 510  RTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGR----HLTLATIPSEDPA 565

Query: 598  TYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRK 657
            TY ++ +AET  VFQ+ESR    ++ +L+P    DL+  VA+ RPGP+Q  MV  ++ R+
Sbjct: 566  TYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 625

Query: 658  HGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK- 716
              +  + YP        LK V   T G+ L+QEQVM++A V A YT G AD LRR+M   
Sbjct: 626  LKQEPVTYPSPQ-----LKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAW 680

Query: 717  KKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWL 776
            K+   +   R   ++G + N      A  IF+ ++ F  YGF +SH+A++ L+ Y ++WL
Sbjct: 681  KRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWL 740

Query: 777  KTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGR---- 832
            K H PA F  A++++          L++E R   + +   DV  SD+  T+  D      
Sbjct: 741  KCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLA 800

Query: 833  IVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDR 892
            I  GL  ++G+ E   + + +AR+Q  P++++ D C R  L   + R    L   GAL  
Sbjct: 801  IRMGLRLVRGLAEADAKRVQQARSQ-RPWRNVEDLCLRAGL---DARARARLADGGALRA 856

Query: 893  LGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDV 952
            L    H                         +A  Q A  A    + LF         DV
Sbjct: 857  LASDRH-------------------------QARWQVA--AVQPQLPLF--------ADV 881

Query: 953  YANHRKVREL---TLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQ 1009
             A   +  +L   T+ E L  +  TLG  L  HP+      +R    +   +L+      
Sbjct: 882  QALPEEPVQLPVPTVGEDLMADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGD 941

Query: 1010 TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEV 1069
             IA   + +   + +    + FVTL+D  G +   ++       +  L    ++ V G +
Sbjct: 942  NIAVAGLVVGRQRPQTASGVTFVTLEDEHGMVNVVVWRALAERQRRALVGSQLLKVSGRL 1001

Query: 1070 SNDD 1073
              ++
Sbjct: 1002 EQEN 1005