Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1160 a.a., DNA polymerase III subunit alpha (NCBI) from Escherichia coli BW25113

 Score = 1325 bits (3430), Expect = 0.0
 Identities = 684/1178 (58%), Positives = 868/1178 (73%), Gaps = 24/1178 (2%)

Query: 1    MSVP-FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGA 59
            MS P FVHLRVHS++S++DGL +  PL K    + MPA+AITD +N+C LVKFY    GA
Sbjct: 1    MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60

Query: 60   GIKPICGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREW 119
            GIKPI GAD  +        L+ +  LA +  GY+NLT LIS+ +  G      I+ R+W
Sbjct: 61   GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120

Query: 120  IAPASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEE 179
            +   +EGLI LS G+ GD+G +LL G     +  +  +   FP+R+++E+ RT R  +E 
Sbjct: 121  LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180

Query: 180  YVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYL 239
            Y+HAAV LA+  G P+VATNDVRFI  +DFDAHE RV I +G+TLDDP+RPR YS QQY+
Sbjct: 181  YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240

Query: 240  KSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEG 299
            +S EEM ELF+D+P+A+ANTVEIAKRCN+ V+LG+YFLP FPT + M  +DYL   A EG
Sbjct: 241  RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGD-MSTEDYLVKRAKEG 299

Query: 300  LEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVP 359
            LEERLA L+P E      ++R  Y +RL+ EL +I QMGFPGYFLIVM+FI+W+K+N VP
Sbjct: 300  LEERLAFLFPDEE--ERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357

Query: 360  VGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDY 419
            VGPGRGSGAGSLVAY LKITDLDPL +DLLFERFLNPERVSMPDFDVDFCM+ RD+VI++
Sbjct: 358  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417

Query: 420  VAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQ 479
            VA+ YGR+AVSQIITFGTMAAKAV+RDV RV G  YG  DR+SK+IP + GMTL KA+E 
Sbjct: 418  VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477

Query: 480  EEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGL 539
            E  L +  + DE+ + + DMA KLEGVTR  GKHAGGVVIAPTK+TDF+P+ CDEEG   
Sbjct: 478  EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537

Query: 540  VTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTY 599
            VTQFDK DVE AGLVKFDFLGLRTLTII WA+E+IN+ +AK   P L+I  IPLDD+K++
Sbjct: 538  VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597

Query: 600  ELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHG 659
            ++LQ++ETTAVFQLESRGMK+LIK+L+PDC ED+IALVALFRPGPLQSGMVD+FI+RKHG
Sbjct: 598  DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657

Query: 660  RAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKP 719
            R E++YP   +Q+E LKPVL PTYGIILYQEQVMQIAQV++GYTLGGADMLRRAMGKKKP
Sbjct: 658  REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717

Query: 720  EEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTH 779
            EEMAKQR  F EG   N I+A+LA  IFDLVEKFAGYGFNKSHSAAY LVSYQT WLK H
Sbjct: 718  EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777

Query: 780  YPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGA 839
            YPA FMAAV++ADM NT+KVV LV+E   M L++  PD+N   + F VN+DG IVYG+GA
Sbjct: 778  YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837

Query: 840  IKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPHFHD 899
            IKGVGEGP+EAI+EAR +GG F++LFD C R D K++N+R L+ L+ SGA DRLGPH   
Sbjct: 838  IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH--- 894

Query: 900  EIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANHRKV 959
                        RA L+++LG+A+KAA+Q A     G  D+FG + +  +  +  ++   
Sbjct: 895  ------------RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPE-QIEQSYASC 941

Query: 960  RELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRF-ARQRIVDLKPSRETQ--TIAGMII 1016
            +    +  L GE++TLGLYLTGHPI++Y  EI R+    R+ D+ P+   +  T AG+++
Sbjct: 942  QPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVV 1001

Query: 1017 ALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSG 1076
            A RVM  K+G+++G  TLDDRSGR+E  LF DA    Q LL+ D +++V G+VS DDFSG
Sbjct: 1002 AARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSG 1061

Query: 1077 GLRLRVKQVMTMEDARTKLAESLRLKVAHDALKGDRLKWLGELITRHR-GACPITLEYTG 1135
            GL++  ++VM +++AR K A  L + +    +    L  L + +  HR G  P+ L Y  
Sbjct: 1062 GLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQR 1121

Query: 1136 SDAKAMLQFGEQWAIDPADGLIQALRDQFGRENVFLQY 1173
            +DA+A L+FG  W + P+D L+  LR   G E V L++
Sbjct: 1122 ADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159