Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1002 a.a., translesion DNA polymerase (imuC-like) (from data) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  233 bits (595), Expect = 4e-65
 Identities = 180/561 (32%), Positives = 269/561 (47%), Gaps = 51/561 (9%)

Query: 326 RLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLA 385
           R+  ELDII Q  F  YFLI  + +K+A+        GRGSGA S+VAY L ITD+DP+ 
Sbjct: 270 RILKELDIIRQKDFVSYFLINYEIVKFARERGFYY-VGRGSGANSIVAYCLNITDVDPIE 328

Query: 386 YDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEAYG---RNAVSQIITFGTMAAKA 442
            DL FERF+N  R + PDFD+DF    RD VI ++   +       V  + T  T    +
Sbjct: 329 LDLYFERFINLYRSTPPDFDIDFSWRDRDEVIQHIFHKHNTEDHEHVCLLATHNTFQINS 388

Query: 443 VVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILRDFLK-GDEDAREIWDMAL 501
            +R++    GK +GL                    + E ++   +K G+     I  + L
Sbjct: 389 SIREL----GKVFGLPKT-----------------DIEALINHVVKPGNYIPDRIGALVL 427

Query: 502 K----LEGVTRGTGKHAGGVVIAPTKL-----TDFSPIACDEEGGGLVTQFDKDDVEAAG 552
           K    + G+      HAGG++I+   +     TD  P       G  ++ FD    E  G
Sbjct: 428 KYSQLIHGMPSHLSIHAGGILISQQPIHYYTATDLPP------KGFPISHFDMVTAEEIG 481

Query: 553 LVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYELLQKAETTAVFQ 612
             KFD L  R L  I+ ++EII + Q KK       DF    D K  + L+K  T   F 
Sbjct: 482 FAKFDILSQRGLGHIRDSLEIIEKNQGKKVDIHRIKDF--KHDEKIKQHLRKGHTIGAFY 539

Query: 613 LESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELAYPHSDYQY 672
           +ES  M+ L+ KL+ D    L+A  ++ RPG  +SGM+ ++I R H + E+        +
Sbjct: 540 VESPAMRMLLAKLEVDEYLGLVAASSIIRPGVARSGMMREYILR-HRKPEM---RKSRAH 595

Query: 673 EGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMA--KQRGGFI 730
             L  ++  TYGI++YQE V+++A   AG +   AD+LRR M  K     A  K +  F 
Sbjct: 596 PILHDLMPETYGIMVYQEDVIKVAHYFAGLSFDEADVLRRGMSGKFRSRAAFLKVKESFF 655

Query: 731 EGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLS 790
           +  +       +   I+  VE FAGY F K HSA++ + SYQ+ +LK H+P  FM  V++
Sbjct: 656 KKSMEKGHAPKITSEIWFQVESFAGYSFAKGHSASFAVESYQSLYLKAHFPLEFMVGVIN 715

Query: 791 ADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAIKGVGEGPVEA 850
            +     K    + E++     +  P +N SD+  TV     +  G   +K + +     
Sbjct: 716 -NFGGFYKTEFYIRELQGYHADVQLPHLNESDY-LTVIKGTTVYLGFIHLKYLQKDITNT 773

Query: 851 IVEARAQGGPFKDLFDFCERI 871
           I++ R   GPF  L DF  RI
Sbjct: 774 ILQNRETEGPFTGLRDFINRI 794



 Score = 29.6 bits (65), Expect = 0.001
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 6  VHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPIC 65
          +++  HS FS   G + ++ +      + + A+A+TD +   ++  F K    A I  + 
Sbjct: 1  MYVNCHSYFSFRYGTMPVQEMVDQAKKLGVKAMALTDINCTAAVYPFLKATKAANIHGVI 60

Query: 66 GAD 68
          G D
Sbjct: 61 GID 63