Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  355 bits (912), Expect = e-102
 Identities = 285/1081 (26%), Positives = 494/1081 (45%), Gaps = 88/1081 (8%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            +  L+V + FS + G    + L +    + + A+ + D++++  +V+  + +   G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRLV 62

Query: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPAS 124
             G  L LA          +     D   Y  LT LI+ G + G +N  ++    W     
Sbjct: 63   IGCRLDLADG------MSVLVYPTDRAAYSRLTRLITLGKSRGGKNNCLL---HW----- 108

Query: 125  EGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYVHAA 184
            + ++A +   +G IG+ +     D     L+    +F +R YV +    R  D+  +H  
Sbjct: 109  DDVVAYT---DGMIGILVPDLPDDLCGIQLRKMAELFGDRAYVSLCLRRRQNDQLRLHEI 165

Query: 185  VALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSAEE 244
              LA +     V TNDV F +       +   CI    T+D+    R     +YLK  EE
Sbjct: 166  SNLATRFKVRTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERERHADRYLKPPEE 225

Query: 245  MAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGLEERL 304
            M  LF     A+A T+EI +RC   ++   Y  P+     G      L H   + + +R 
Sbjct: 226  MERLFPRYRQALARTMEIVRRCTFSLEELTYQYPEEAIVPGKDAQASLEHYVWQCVPDR- 284

Query: 305  AVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGPGR 364
               +P+   P+        L  ++ ELD+I  M +  YFL V   +++A++  + +  GR
Sbjct: 285  ---YPEGLPPDV-------LKVVRHELDLIRTMKYAPYFLTVFSIVRYARSQGI-LCQGR 333

Query: 365  GSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEAY 424
            GS A S V Y+L IT +DP   DLLFERF++ ER   PD DVDF  + R+ VI ++   Y
Sbjct: 334  GSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYRTY 393

Query: 425  GRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
             R   +   T     A+  +RDV    GK+ GL + + K +   +    E+  ++   +R
Sbjct: 394  TREKAALCATVTRYRARGAIRDV----GKALGLPEDVIKALSSGMWSWSEEVCDRN--VR 447

Query: 485  DFLKGDEDAREIWDMAL--KLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQ 542
            +     +D R +  + L  +L G  R  G+H GG V+   +L D  PI         + +
Sbjct: 448  ELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPATMKDRQIIE 507

Query: 543  FDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYELL 602
            +DKDDVEA   +K D L L  LT +  A ++I   + +    DL++  I  +D  TY ++
Sbjct: 508  WDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDR----DLDLSKIEQEDSVTYAMI 563

Query: 603  QKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAE 662
            +KA+T   FQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q  MV  ++ R+ G+  
Sbjct: 564  RKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGKEA 623

Query: 663  LAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEE 721
            + YP  +     L+ VL  T G+ L+QE  M++A V AG+T G AD LR++M   K    
Sbjct: 624  VEYPTPE-----LEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGG 678

Query: 722  MAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYP 781
            +++ +   + G V N    + A   F  +E F  YGF +SH+A++ L++Y ++++K HYP
Sbjct: 679  VSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCHYP 738

Query: 782  APFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGR-----IVYG 836
              F AA++++          +V + R+  + +    +N S +  T+   G      +  G
Sbjct: 739  EAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDRHAVRLG 798

Query: 837  LGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPH 896
               +KG+       +V AR           F    D+ R +    +ALV+    D     
Sbjct: 799  FRQVKGLAVADAARVVAARMNNA-------FVSVDDMWRRSGVPSEALVQLAKAD----- 846

Query: 897  FHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFD---AADVDVY 953
                  A+  ++ + R   L     AIKA            + LF +  +   AA  +  
Sbjct: 847  ------AFLPSLKLERRDAL----WAIKALRDEP-------LPLFAAAAEREMAAIAEQQ 889

Query: 954  ANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTI-- 1011
                 +R++T    +  +    GL L  HPI     ++         +   SR+ + +  
Sbjct: 890  EPGVALRQMTDGHNVIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYT 949

Query: 1012 AGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSN 1071
            AG+++  +   + KG  + F+T++D +G     ++   F   +  +   +M+ + G +  
Sbjct: 950  AGLVLVRQKPGSAKG--VMFITIEDETGPANLVVWPTLFEKRRRAVLGSSMMAINGRIQR 1007

Query: 1072 D 1072
            +
Sbjct: 1008 E 1008