Pairwise Alignments

Query, 1174 a.a., DNA polymerase III, alpha subunit from Pseudomonas putida KT2440

Subject, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  357 bits (915), Expect = e-102
 Identities = 288/1078 (26%), Positives = 483/1078 (44%), Gaps = 82/1078 (7%)

Query: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64
            +  L+V + FS + G    + L +    + + A+ + D++++  +V+  + +    I+ +
Sbjct: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRLV 62

Query: 65   CGADLWLAGADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVILQREWIAPAS 124
             G  L L           +     D   Y  LT LI+ G + G +N  ++   + IA  S
Sbjct: 63   VGCRLDLTDG------MSLLVYPTDRAAYSRLTRLITLGKSRGGKNNCILHWDDVIA-YS 115

Query: 125  EGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTNRARDEEYVHAA 184
             G+I +      D   A    R  EA          F +R YV +    R  D+  +H  
Sbjct: 116  RGMIGVLVPDLPDATCAAQLRRIAEA----------FGDRAYVSLCLRRRQNDQMRLHEI 165

Query: 185  VALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCYSDQQYLKSAEE 244
              LA +     V TNDV F +       +   CI    T+DD    R     +YLK  EE
Sbjct: 166  SNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERERHADRYLKPPEE 225

Query: 245  MAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVAHEGLEERL 304
            M  LFS   +A+A T+EI +RC   ++   Y  P+     G      L H   E   +R 
Sbjct: 226  MERLFSRYSEALARTLEIVRRCKFSLEELTYQYPEEAIVPGKDAQASLEHYVWECAPDRY 285

Query: 305  AVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPVGPGR 364
                P++            L  ++ ELD+I  M +  YFL V   +++A++  + +  GR
Sbjct: 286  PEGLPQDV-----------LKTVRHELDLIRTMKYAPYFLTVFSIVRFARSQGI-LCQGR 333

Query: 365  GSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEAY 424
            GS A S V Y+L IT +DP   DLLFERF++ ER   PD DVDF  + R+ VI ++ + Y
Sbjct: 334  GSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYKTY 393

Query: 425  GRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEILR 484
             ++  +   T     AK  +RDV    GK+ GL + + K +    GM        +  +R
Sbjct: 394  TKDKAALCATVTRYRAKGAIRDV----GKALGLPEDVIKAL--SSGMWSWSEEVPDRNIR 447

Query: 485  DFLKGDEDAREIWDMAL--KLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLVTQ 542
            +     +D R    + L  +L G  R  G+H GG V+   +L D  PI         + +
Sbjct: 448  ELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPATMKDRQIIE 507

Query: 543  FDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNIDFIPLDDRKTYELL 602
            +DKDDVEA   +K D L L  LT +  A ++I   + ++    L++  I  +D  TY ++
Sbjct: 508  WDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQQ----LDLSNIEQEDAATYAMI 563

Query: 603  QKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAE 662
            +KA+T   FQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q  MV  ++ R+ G+  
Sbjct: 564  RKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGKEP 623

Query: 663  LAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEE 721
            + YP  +     L+ VL  T G+ L+QE  M++A V AG+T G AD LR++M   K    
Sbjct: 624  VEYPTPE-----LEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGG 678

Query: 722  MAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYP 781
            +++ +   + G V N    + A   F  +E F  YGF +SH+A++ L++Y + ++K HYP
Sbjct: 679  VSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHYP 738

Query: 782  APFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTV-----NNDGRIVYG 836
              F AA+L++          +V +     + +    VN S +  T+     ++   +  G
Sbjct: 739  DVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSDRHAVRLG 798

Query: 837  LGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSGALDRLGPH 896
               +KG+       IV AR    PF  + D   R  +        +ALV+    D   P 
Sbjct: 799  FRQVKGLAVADAARIVAAR-MNNPFASVDDMWRRSSV------PTEALVQLAEADAFLPS 851

Query: 897  FHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAADVDVYANH 956
               E +     I   R   L     A  A  +A   A+    ++                
Sbjct: 852  LKLERRDALWAIKALRDEPLPLFAAA--AEREATAIAEQQEPEV---------------- 893

Query: 957  RKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRETQTI--AGM 1014
              +R++T    +  +    GL L  HP+     ++         +   +R+ + +  AG+
Sbjct: 894  -ALRQMTDGHNVIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGL 952

Query: 1015 IIALRVMKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSND 1072
            ++  +   + KG  + F+T++D +G     ++   F   +S++   +M+ + G +  +
Sbjct: 953  VLVRQKPGSAKG--VMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRIQRE 1008