Pairwise Alignments

Query, 561 a.a., putative Phage terminase, large subunit from Pseudomonas putida KT2440

Subject, 553 a.a., terminase large subunit from Escherichia coli ECRC99

 Score = 90.9 bits (224), Expect = 1e-22
 Identities = 102/482 (21%), Positives = 191/482 (39%), Gaps = 25/482 (5%)

Query: 78  PWQLFSVCVPFGWVRKKDGTRRYRTILVFVPRKNGKSIIGGGVGLYMFVADGEFGAEVYS 137
           PW    V   FG    + G R  + + + +P+KN KS +  G+ +   + +    A    
Sbjct: 59  PWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTI 118

Query: 138 GATTEKQAWEVFRPAKLMVERTDDLREHYGVDVNASNMVVLADGSRFEPVIGKPG--DGS 195
            A T + A   F PA+ MV R DDL +   V  +   +      +  + V   P    G 
Sbjct: 119 LAPTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADPNTVSGI 178

Query: 196 SPSCSVVDEY----HEHQDSTLYDTMETGMGAREQPIMLVITT-AGSSIGGPCHQLIRDS 250
               +++DE      +++   +      G+ +R +  ++  TT +     G   Q ++ +
Sbjct: 179 KSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYA 238

Query: 251 ERMLEGVIDRPDLWPALY-----TIDQGDDWTSEIALRKANPNFGISVAEDFLLARQRDA 305
             + +G I  P   P ++      ++ G     E  L   NPN G SV E FL    R A
Sbjct: 239 RDVRDGKIHDPHFLPVIFEHPPEMVESGAHLLME-NLAMVNPNLGYSVDEAFLYREYRKA 297

Query: 306 MQSATKQ-ATFRTKHLNEWVG---AKNAWLNMLRWKEAPVRKSLAELEGRSCYGSLDL-A 360
            ++  +    F +KH N  +G     + W     W++   R SL ++  R+   ++ +  
Sbjct: 298 REAGEEAFRGFMSKHANVEIGLALRSDRWAGADFWEQQGRRVSLDDILQRADVVTVGIDG 357

Query: 361 SKIDIAANLLIFPPHGDDPFWHIHARYYLPEARVLEELDSNTARYREFDALGLLTLTDGE 420
             +D    + +     +   W      ++ E  V+    S  +R+++F A G +T+    
Sbjct: 358 GGLDDLLGMYVTGRDRETREWLGWGHAWVHETAVVRR-KSEVSRFQDFVACGDMTIVRRV 416

Query: 421 VTDFEVIKEDMREFAGRFDIRAYAYDPWQATQLAQEMDAEGLPMVELRQTVQ--NLSEPM 478
             D   + E +R       +     DP    Q+   +   G+P   +    Q   L   +
Sbjct: 417 GDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQILDSLAEAGIPDESVVGISQGWKLGGAI 476

Query: 479 KEVEALVLQRKLAHGDCPVLTWMASNVVAKLDVKDN--IYPNKERPENKIDGMVSLITGC 536
           K  E  + +  L HG  P++ W   N  A+++ K N  +   +     KID +++L    
Sbjct: 477 KTTERKLAEGVLVHGGQPLMAWCVGN--ARVEPKGNAILITKQASGRGKIDPLMALFNAV 534

Query: 537 AV 538
           ++
Sbjct: 535 SL 536