Pairwise Alignments

Query, 561 a.a., putative Phage terminase, large subunit from Pseudomonas putida KT2440

Subject, 577 a.a., Putative terminase large subunit from Escherichia coli ECRC100

 Score =  492 bits (1266), Expect = e-143
 Identities = 258/555 (46%), Positives = 348/555 (62%), Gaps = 9/555 (1%)

Query: 1   MKAAEKYAKDVVAGKILVCKWIMLLAQRHLDDLAVSKRKDFPYKFDPAKAEKVAKFLQLL 60
           + AA +YA+DVV GKI+ C++++   QRHLDDL   K K F Y+FD   AE+ AKF+QLL
Sbjct: 9   VNAANQYARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERAAKFIQLL 68

Query: 61  PHTKGKWGGKKQLIKLEPWQLFSVCVPFGWVRKKDGTRRYRTILVFVPRKNGKSIIGGGV 120
           PHTKG+W  K+  I LEPWQLF +C  FGWV K    RR+R +   +PRKNGKS I  GV
Sbjct: 69  PHTKGEWAFKRMPITLEPWQLFVICCAFGWVNKGSRLRRFREVYTEIPRKNGKSAISAGV 128

Query: 121 GLYMFVADGEFGAEVYSGATTEKQAWEVFRPAKLMVERTDDLREHYGVDVNASNMVVLAD 180
            LY F  D EFGAEVYSGATTEKQAWEVFRPA+LM +RT  L E +G++VNASNM    D
Sbjct: 129 ALYCFACDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPMLTEAFGIEVNASNMNRPED 188

Query: 181 GSRFEPVIGKPGDGSSPSCSVVDEYHEHQDSTLYDTMETGMGAREQPIMLVITTAGSSIG 240
           G+RFEP+IG PGDGSSP C+VVDEYHEH    LY TM TGMGAR QP+M  ITTAG +I 
Sbjct: 189 GARFEPLIGNPGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIE 248

Query: 241 GPCHQLIRDSERMLEGVIDRPDLWPALYTIDQGDDWTSEIALRKANPNFGISVAEDFLLA 300
           GPC+   R+   ML G +   +L+  +YT+D+GDDW     L KANPN G+SV  +FLL+
Sbjct: 249 GPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWIDPQVLEKANPNIGVSVYREFLLS 308

Query: 301 RQRDAMQSATKQATFRTKHLNEWVGAKNAWLNMLRWKEAPVRK-SLAELEGRSCYGSLDL 359
           +Q+ A  +A     F+TKHLN WV A++A+ N++ W+    +  +L + EG+ C  + DL
Sbjct: 309 QQQRAKNNARLANVFKTKHLNIWVSARSAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDL 368

Query: 360 ASKIDI--AANLLIFPPHGDDPFWHIHARYYLPEARVL---EELDSNTA-RYREFDALGL 413
           A K+D+   A L      G   ++ +  R+++P   V    +  D  TA R++++  +G+
Sbjct: 369 ARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMGV 428

Query: 414 LTLTDGEVTDFEVIKEDMREFAGRFDIRAYAYDPWQATQLAQEMDAEGLPMVELRQTVQN 473
           LT+T G   D+  I E+ +       +     DP+ AT L+ ++  E L  + + Q   N
Sbjct: 429 LTVTAGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPITIIQNYTN 488

Query: 474 LSEPMKEVEALVLQRKLAHGDCPVLTWMASNVVAKL--DVKDNIYPNKERPENKIDGMVS 531
           +S+PMKE+EA +   +  H   P++TW   NVV K      D + P KE+ ENKIDG V+
Sbjct: 489 MSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPVKEQAENKIDGAVA 548

Query: 532 LITGCAVAIKLGIDD 546
           LI     A+    DD
Sbjct: 549 LIMAIGRAMLKEPDD 563