Pairwise Alignments

Query, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 356 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  170 bits (430), Expect = 6e-47
 Identities = 112/348 (32%), Positives = 178/348 (51%), Gaps = 2/348 (0%)

Query: 13  AAALLLAACGQEAAPPAAPRPALVVQPQPAEAA-ADSYPGEVRARFEPELAFRIGGKVSK 71
           AA+LLL AC +E APP   RP L ++ +  +      + G ++AR+E  L FR+ G++++
Sbjct: 9   AASLLLVACSKEDAPPEPVRPVLSMEVKAEDQENLGRFAGTIQARYESNLGFRVPGRIAR 68

Query: 72  RLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDRYQKLLERQMV 131
           R+V+ G  V+    LA LDP D + QL + +  LA  +A     +A   R Q+L  R + 
Sbjct: 69  RVVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQELFNRGVG 128

Query: 132 SHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKRQVEVGQVVAAG 191
           + +Q D A+   +   A L QAKA  + A +Q  YA LR   AG++     E GQVV+AG
Sbjct: 129 AQAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAEAGQVVSAG 188

Query: 192 QTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIRELSPAADPRSR 251
           Q V TLA    +E  I LP     R        V     P       +RE+ P A   +R
Sbjct: 189 QQVVTLARPDIKEAVIDLPAGLAERLPPDVVFLVAGQLDPSVNTTAIVREIEPQAQSATR 248

Query: 252 TFAARIAFTTAAVPAELGQSARVFIAKDGLIPLAVPLSAVTAENGQAYVWRVNKESR-LE 310
           T  AR+  T       LG +  V ++      + VPLSA+   +G+  +W ++  S+ ++
Sbjct: 249 TRRARLTLTETPPAFRLGTAISVTLSTAIAPRIEVPLSALQEVDGKTRIWLLDTHSQTVQ 308

Query: 311 RATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVRPVDRSNR 358
              + + +  +DS  + +G+ PG+ +V AG + L+ GQ+V+  + S R
Sbjct: 309 TRDISVISRDADSALLNDGVKPGERIVIAGVNSLKPGQKVKIDEDSPR 356