Pairwise Alignments

Query, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  203 bits (517), Expect = 6e-57
 Identities = 134/356 (37%), Positives = 191/356 (53%), Gaps = 16/356 (4%)

Query: 3   RHALSIALPAAAALLLAACGQEAAPPAAPRPALVVQPQPAEA----AADSYPGEVRARFE 58
           R A  + LPA   + L  C  +   PAA  P   V+     A    A   +  EVRAR E
Sbjct: 12  RSAAWLLLPA---VFLVGCSPK---PAAQDPVRAVKFVTVGASEFDAQPEFSAEVRARVE 65

Query: 59  PELAFRIGGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAE 118
             L FR+ GK+++R  E GQ V+A Q LA+LDPQD RL  EA RAQ AAA  N  L  A+
Sbjct: 66  SRLGFRVAGKITRRQAELGQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDLAAAD 125

Query: 119 RDRYQKLLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIA 178
             RY++L E+  +S ++ +  E  ++A  A+L+QA+A+    GNQA Y  L A  AG+I 
Sbjct: 126 LKRYRELREQNFISGAELERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVAGIIT 185

Query: 179 KRQVEVGQVVAAGQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGR 238
             + E GQVV AG  V  +A DG R+V   +PE +      G PV+V  WS      QG+
Sbjct: 186 AIEAEPGQVVQAGTPVVRIAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSGGN-ELQGQ 244

Query: 239 IRELSPAADPRSRTFAARIAFTTAAVPAELGQSARV---FIAKDGLIPLAVPLSAVTAEN 295
           +RE++ +AD  +RT++ ++A   A  P  LG +       +A  G   L +P SA+  E 
Sbjct: 245 VREVAASADAVTRTYSIKVAIDAATAP-PLGATVYARPQALAHAGATVLKLPTSALRQEG 303

Query: 296 GQAYVWRVNKESRLERA-TVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEV 350
             + VW ++K +   R+  V++     +   +  G+ PG  VVAAG HVL  GQ+V
Sbjct: 304 KGSAVWVLDKSTMTVRSQAVQVATADGNEAVIASGITPGMMVVAAGVHVLSPGQKV 359