Pairwise Alignments

Query, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 390 a.a., CzcABC family efflux RND transporter, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  140 bits (354), Expect = 4e-38
 Identities = 108/352 (30%), Positives = 175/352 (49%), Gaps = 7/352 (1%)

Query: 6   LSIALPAAAALLLAACGQEAAPPAAPRPALVVQPQPAE---AAADSYPGEVRARFE-PEL 61
           +++AL AAAA L       AAP AAP+  +V    P +   A   S  G + AR + P  
Sbjct: 35  VAVALVAAAAALSMRGKDAAAPDAAPQAPVVSVLTPGQTMVARTVSSTGSLAARVDMPVG 94

Query: 62  AFRIGGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDR 121
               GG V++ LV+ G  V+A Q LA ++      Q+ +  AQ+    AN  L +A+ +R
Sbjct: 95  VVGEGGMVTRVLVQPGDWVRAGQVLATVERSVQSEQVNSLAAQVEVQRANAKLAQAQLER 154

Query: 122 YQKLLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKRQ 181
            + L+ R  +S +  D         +A+++ A+A+      +     +RAP +G++  R 
Sbjct: 155 AKALVGRGFISAADIDQRTATRDQAVAQVRVAEAQLAEQRARTGRLDIRAPASGLVLTRT 214

Query: 182 VEVGQVV-AAGQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIR 240
           VE GQ+V A G T+F +A DGE E+   + E   A    G   +V      Q  F GR+ 
Sbjct: 215 VEPGQIVQAGGGTLFRMAKDGEMEMQAQVAEADLATLRAGNSATVTPVGSNQ-HFSGRVW 273

Query: 241 ELSPAADPRSRTFAARIAFTTAAVPAELGQSARVFIAKDGLIPLAVPLSAVTAENGQAYV 300
           ++SP  DP++R   ARIA          G ++    +  G  PL +P SAV ++   +YV
Sbjct: 274 QVSPVVDPQTRQGIARIAVAYNDAIRPGGFASATITSGSGNTPL-LPESAVQSDAKGSYV 332

Query: 301 WRVNKESRLERATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVRP 352
           + VN ++++ER  V++G      V +  G+   + +V + G  L  GQ+V+P
Sbjct: 333 YIVNGKNQVERRDVKVGQVSDTGVAITSGITGAERIVTSAGAFLTVGQKVKP 384