Pairwise Alignments

Query, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

 Score =  179 bits (454), Expect = 1e-49
 Identities = 127/342 (37%), Positives = 173/342 (50%), Gaps = 10/342 (2%)

Query: 16  LLLAACGQEAAPPAAPR--PALV--VQPQPAEAAADSYPGEVRARFEPELAFRIGGKVSK 71
           L L ACG +++P   PR  P +V  V  Q A A A S+ G V AR + +L FR+ GK+ +
Sbjct: 15  LALVACG-DSSPGKDPRDTPPVVKAVSVQDASALARSFSGVVVARTQSDLGFRVSGKILQ 73

Query: 72  RLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDRYQKLLERQMV 131
           RLV+ GQ VK  QPL  +DP D+ LQ  A +  + AA A       +  RY+ L+    V
Sbjct: 74  RLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVADGAV 133

Query: 132 SHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKRQVEVGQVVAAG 191
           S S YD  +    A  A+L  A+A+ DVA N  EYAVL A   GV+     E GQVV+AG
Sbjct: 134 SASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVVSAG 193

Query: 192 QTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIRELSPAADPRSR 251
           Q V  LA  G+RE  + LPE    R A G      L+  P      ++R LS AADP +R
Sbjct: 194 QAVVRLARAGQREAVVYLPET--LRPAPGSTALATLFGKPAQAVPAKLRLLSDAADPITR 251

Query: 252 TFAARIAFTTAAVPAELGQSARVFI--AKDGLIPLAVPLSAVTAENGQAYVWRV-NKESR 308
           TF AR   T     A LG +  + I           +P+ A+      A VW +  + ++
Sbjct: 252 TFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAGQPAK 311

Query: 309 LERATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEV 350
           +    V + +   +   V   L  GD +VA G H+LR+G EV
Sbjct: 312 VSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEV 353