Pairwise Alignments

Query, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 371 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  172 bits (437), Expect = 1e-47
 Identities = 126/357 (35%), Positives = 173/357 (48%), Gaps = 12/357 (3%)

Query: 3   RHALSIALPAAAALLLAACGQEAAPPAAPRPALV--VQPQPAEAAADSYPGEVRARFEPE 60
           R  LS A+  A    LAACG++       +  LV     Q A   + S+ G V AR E +
Sbjct: 4   RRLLSFAVICALPFALAACGEKTPSDPRTQAPLVRAATVQGAGVESRSFTGTVAARVESD 63

Query: 61  LAFRIGGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERD 120
           L FR+ GKV +RLV+ GQ VK  QPL  LDP D+ L     +  +AAA A       +  
Sbjct: 64  LGFRVSGKVLERLVDAGQTVKRGQPLMRLDPVDLELAARTQQETVAAARARALQTTEDEA 123

Query: 121 RYQKLLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKR 180
           RY+ L     +S S YD  +    A  A+L  A+A+ DVA N + YAVL A   G++ + 
Sbjct: 124 RYRGLRGTGAISSSAYDQVKAAADAAKAQLSAAQAQADVARNASRYAVLVADGDGIVMET 183

Query: 181 QVEVGQVVAAGQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIR 240
             E GQVV AGQTV  LA  G+RE  I LPE    R A+G       +          +R
Sbjct: 184 LAEPGQVVNAGQTVVRLAQAGQREAVIQLPET--LRPALGSTGLATRFGKEGVSIPATLR 241

Query: 241 ELSPAADPRSRTFAARIAFTTAAVPAELGQSARVFI-----AKDGLIPLAVPLSAVTAEN 295
           +LS  AD  +RTF AR           LG +  + I     A  G   L VPL ++    
Sbjct: 242 QLSNTADRLTRTFEARYVLEGELAATPLGATVTIQIPDAQAATQG--RLQVPLGSLFDAG 299

Query: 296 GQAYVWRVNKE-SRLERATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEVR 351
               VW ++ E +++    V +   G D+  V   +  G+ +VA G H+LREG++VR
Sbjct: 300 KGPGVWVIHGEPAKVAWRPVAIQHMGDDAARVTGQIQQGERIVALGAHLLREGEQVR 356