Pairwise Alignments

Query, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

Subject, 368 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  116 bits (291), Expect = 8e-31
 Identities = 93/365 (25%), Positives = 168/365 (46%), Gaps = 15/365 (4%)

Query: 2   LRHALSIALPAAAALLLAACGQEAAPPAAPRPALVVQPQPAEAAA-----DSYPGEVRAR 56
           ++  L I      A ++++CG EA   A     ++     +  +      D YPG V   
Sbjct: 1   MKKFLWIIFVVGVAGVVSSCGSEANTQAGQGQQVISVHATSVTSKHVTGLDLYPGTVVPL 60

Query: 57  FEPELAFRIGGKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVR 116
            E E+  ++ G ++K  VE+GQ V   Q L E+D    +   E  +A L +A+ANL  V+
Sbjct: 61  NEIEIRPQVSGYINKIFVEDGQEVAKGQKLYEIDRSKYQAAYEQAQATLKSAKANLERVK 120

Query: 117 AERDRYQKLLERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGV 176
            +  RY+ L +++ ++  Q D A+       +++  A+A+         Y+V+ AP +G 
Sbjct: 121 KDLARYEALDKQEAIAKQQLDYAKADILTAESQVSSAEAQVRSTLTDYNYSVITAPFSGT 180

Query: 177 IAKRQVEVGQVVAAGQTVF-TLAADGEREVAIGLPEQQFARFA--------VGQPVSVEL 227
           +   QV +G  V+AGQ++  TL+++    V   + E+   RF+             +++ 
Sbjct: 181 VGISQVRLGAQVSAGQSLLNTLSSNDPVLVDFVVNERDVRRFSKMMKNESLPDSTFTIQF 240

Query: 228 WSHPQARFQGRIRELSPAADPRSRTFAARIAFTTAAVPAELGQSARVFIAKDGL-IPLAV 286
             +   R  G +  +  A   +S T   R+ F         G +  + +    +   +A+
Sbjct: 241 GENDVYRHHGELTTIDRAVGRQSGTINMRVEFPNPDRELIPGMTLNLRVLNQDIGDQIAI 300

Query: 287 PLSAVTAENGQAYVWRVNKESRLERATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLRE 346
           P  AVT + G+ +V+ V  +S + +  V+LG      + V EGL PG  +V  G   LRE
Sbjct: 301 PFKAVTEQMGEYFVYVVGDDSVVHQQNVQLGTKVGAEIVVREGLKPGQKIVVEGIQKLRE 360

Query: 347 GQEVR 351
           G +V+
Sbjct: 361 GAKVQ 365