Pairwise Alignments

Query, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

Subject, 315 a.a., site-specific recombinase from Agrobacterium fabrum C58

 Score =  139 bits (351), Expect = 6e-38
 Identities = 99/289 (34%), Positives = 146/289 (50%), Gaps = 14/289 (4%)

Query: 19  EKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDL-------ILDHLAWRLDQGYKPR 71
           E+ L+DNT  +Y  D   F  +L  + +  P A RD+       +   LA R  +G   R
Sbjct: 30  ERRLADNTVEAYERDTRQFLRFLTGY-IGRPAAIRDIADLRPVDLRAFLANRRKEGAGAR 88

Query: 72  STARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAP-DLGE 130
           S  R L+GLR    +L ++ LV       +  P+  K LPK L++     +  A   L E
Sbjct: 89  SLGRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKSLPKPLTDRQALKITTAEAQLNE 148

Query: 131 A--IGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVV 188
              I  R+ A+L +LY CGLR++E + LT          LR+ GKG+K R+VP+      
Sbjct: 149 EPWIAARNAAVLSLLYGCGLRISEALGLTPADFPPGTRSLRITGKGNKTRIVPLLAVVTE 208

Query: 189 WLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLRH 248
            ++ Y++     L    P   +F   RG ++        ++      G+ +  +PH LRH
Sbjct: 209 AVDTYRKLCPYALAADEP---MFLGARGGKLQPAIIQREMQKLRGAFGLPENATPHALRH 265

Query: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297
           +FATHLL  G DLR +Q LLGH+ LSTTQ+YT V  ARL +++   HPR
Sbjct: 266 SFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDTARLLEIYDNAHPR 314