Pairwise Alignments

Query, 444 a.a., carbohydrate-selective porin from Pseudomonas putida KT2440

Subject, 422 a.a., carbohydrate-selective porin from Pseudomonas putida KT2440

 Score =  194 bits (493), Expect = 4e-54
 Identities = 142/442 (32%), Positives = 205/442 (46%), Gaps = 39/442 (8%)

Query: 12  LALSALATPAGASEMFASDSPWMLGDWGGTRSELLEKGYDFTLGYTGEMGSNLHGGYDHD 71
           L L+  +T A AS+   + S  + GDWGG R +L E G   T  Y+GE   N HGG    
Sbjct: 11  LLLALASTTALASDDLMTRST-LTGDWGGLRHQLEEDGVKITGDYSGETAYNAHGGLH-- 67

Query: 72  RTARYSDQFTFGSHLDLEKILGWHDT-EFQLTVTERHGDNISNDRINDPRVGGFTSAQEV 130
           R+ARYS     G   DL K+ G  +  + QLT+ +R G++ S D      VG     QE 
Sbjct: 68  RSARYSQNVKLGVQFDLSKLYGLDNGGKVQLTINDRRGNSASEDL-----VGNRLPIQEN 122

Query: 131 WGRGETWRLTQMWIKQKYFDGALDVKFGRFGEGEDFNSFP----CDFQNLAFCGSQVGNW 186
           +G G   RLT++  ++  F  AL+VK G    G D         C+F N  FCG  +   
Sbjct: 123 YG-GLYTRLTELSYERTLFTPALNVKLGYMAMGNDLGGLDSGILCNFMNAGFCGHPLNMS 181

Query: 187 VGGIWYNWPVSQWALRVRYNLTPELYAQVGVFEQNP-SNLESGNGFKLSGSGTQGAVMPF 245
            G  W N+P +   +RV+Y+L+P    +V  F  +P SN  S   + L    T G V+P 
Sbjct: 182 GGSGWTNYPNAHLGVRVKYDLSPAWQLRVAAFNVDPESNGNSSRAWHLGPKHTTGTVVPV 241

Query: 246 ELVWTPRIQG-LKGEYRAGYYYSNAKAQDVLKDSNGQPAALSGAAYRSSSSKHGLWIGAQ 304
           ELV+  ++QG L GEY+ GYYY ++  + +  D                S + G ++   
Sbjct: 242 ELVY--KLQGELPGEYKLGYYYDSSDVKRIGSDD-------------EVSGRGGHYLLVD 286

Query: 305 QQVTSLASDQSRGLSVFANATVHDKKTNAIDNYVQAGLVFKGPFDARAKDDIGFALARVH 364
           Q V +  +   R L  F   +   K  +    +  AG+V   PF+ R KD +     R  
Sbjct: 287 QAVWNDQASPGRSLHAFGQYSASSKAASPFTKWYGAGVVLYKPFEGRPKDTVALGYGRAV 346

Query: 365 VNPAYRKNARLVNQAAGLYDYDNPGFLPVQDTEYSAELYYGIHLADWLTVRPNLQYIRHP 424
            NP  R         AG        F  +   E   EL YG     WL +RP++QYI  P
Sbjct: 347 PNPRSRDVLEDAAFNAG------QQFPDIDSAEQLIELSYGYQATPWLNLRPDVQYIIEP 400

Query: 425 GGVS--QVDGALIGGLKIQSSF 444
           G  S   +D AL+ GL+++++F
Sbjct: 401 GAFSGKDIDNALVVGLQVKATF 422