Pairwise Alignments

Query, 805 a.a., DNA-binding, ATP-dependent protease from Pseudomonas putida KT2440

Subject, 798 a.a., DNA-binding, ATP-dependent protease from Pseudomonas putida KT2440

 Score =  529 bits (1363), Expect = e-154
 Identities = 311/772 (40%), Positives = 461/772 (59%), Gaps = 26/772 (3%)

Query: 42  VIPIHNRPFFPAQVLPVIVNEEPWAETLDLVAKSPDHCLALFFMDTPPEDHRHFDTSALP 101
           ++P+ +   +P  V+P+ V  E   E L+  A + +  + L     P +D    D  AL 
Sbjct: 9   LLPLRDVVVYPHMVIPLFVGREKSIEALE-AAMTGEKQILLLAQKNPADDDPGED--ALY 65

Query: 102 QYGTLVKVHHASR-ENGKLQFVAQGLSRVRIRNWLK---HHRPPYLVEVEYPRQPAEPTD 157
           + GT+  V    +  +G ++ + +G  R  +  + +   H R     EV    +      
Sbjct: 66  RVGTVATVLQLLKLPDGTVKVLVEGEQRGAVERFSEVEGHIR----AEVSLIDETDTAER 121

Query: 158 EVKAYGMALINAIKELLPLNPLYSEELKNYLNRFSPNDPSPLTDFAAALTSATGNQLQEV 217
           E + +   L++  ++ + L      E+ + LN  S ++P  L D  AA  +    Q QE+
Sbjct: 122 ESEVFVRTLLSQFEQYVQLGKKVPAEVLSSLN--SIDEPGRLVDTMAAHMALKIEQKQEI 179

Query: 218 LDCVPMLKRMEKVLPMLRKEVEVARLQNEISAEVNRQIGEHQREFFLKEQLKVIQQELGL 277
           L+ V +  R+E VL +L  E+++ +++  I   V +Q+   QRE++L EQ+K IQ+ELG 
Sbjct: 180 LEIVDLTTRVEHVLALLDAEIDLLQVEKRIRGRVKKQMERSQREYYLNEQMKAIQKELG- 238

Query: 278 TKDDRSADLEQFEQRLEGKTLPPQARKRIDEEMGKLAILETGSPEYAVTRNYLEWATALP 337
             D+   ++E+ ++R+E   LP  A  +   E+ KL  +   S E  V R+YL+W   +P
Sbjct: 239 DGDEGHNEVEELKKRIEAAGLPKDALAKAQAELNKLKQMSPMSAEATVVRSYLDWLVQVP 298

Query: 338 WGVYGKDKLDLKHARKVLDQYHSGLDDIKERILEFLAVGAWKGEISGSIVLLVGPPGVGK 397
           W    K +LDL  A ++LD  H GL+++KERILE+LAV     +I G ++ LVGPPGVGK
Sbjct: 299 WKAQSKVRLDLAKAEEILDADHYGLEEVKERILEYLAVQKRVKKIRGPVLCLVGPPGVGK 358

Query: 398 TSIGKSIAESLGRPFYRFSVGGMRDEAEIKGHRRTYIGAQPGKLVQALKDVEVMNPVIML 457
           TS+ +SIA +  R F R ++GG+RDEAEI+GHRRTYIG+ PG+L+Q +  V V NP+ +L
Sbjct: 359 TSLAESIAAATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGRLIQKMTKVGVRNPLFLL 418

Query: 458 DEIDKMGQSYQGDPASALLETLDPEQNVDFLDHYLDLRLDLSKVLFVCTANTLDSIPGPL 517
           DEIDKMG   +GDPASALLE LDPEQN +F DHYL++  DLS V+F+CT+N++ +IP  L
Sbjct: 419 DEIDKMGSDMRGDPASALLEVLDPEQNHNFNDHYLEVDYDLSDVMFLCTSNSM-NIPPAL 477

Query: 518 LDRMEVIRLSGYITEEKMTIAKRHLWPKQLEKAGVSKTSLSISDSALRLVIDGYAREAGV 577
           LDRMEVIRL GY  +EK+ IA ++L PKQ++  G+ K  L +  SA+R +I  Y REAGV
Sbjct: 478 LDRMEVIRLPGYTEDEKINIAVKYLVPKQVKANGLKKEELEVDVSAIRDIIRYYTREAGV 537

Query: 578 RQLEKQLGKLVRKAVVKLLENPDAKLKIGTKDLETALGIPVFR------SEQVLAGKGVI 631
           R LE+Q+ K+ RK V +       K+K+ ++ LE  LG+  FR       +Q+    G +
Sbjct: 538 RGLERQIAKVCRKVVKEHTGQKQVKVKVASEQLEHLLGVRKFRYGLAEQQDQI----GQV 593

Query: 632 TGLAWTSMGGATLPIEATRIHTHNRGFKLTGKLGDVMKESAEIAYSYISSNLKQFGGDPG 691
           TGLAWT +GG  L IEA  I    +  K TG LGDVM ES   A + + S  +  G    
Sbjct: 594 TGLAWTQVGGELLTIEAVVIPGKGQLIK-TGSLGDVMVESITAAQTVVRSRARSLGIAAD 652

Query: 692 FFNEAFIHLHVPEGATPKDGPSAGITMASALLSLARDQSAKKGVAMTGELTLTGQVLPIG 751
           F  +  +H+H+PEGATPKDGPSAGI M +AL+S       +  VAMTGE+TL GQVL IG
Sbjct: 653 FHEKHDVHIHMPEGATPKDGPSAGIGMCTALVSALTQIPVRADVAMTGEITLRGQVLAIG 712

Query: 752 GVREKVIAARRQKIFELILPEPNRGDFEELPDYLREGLTVHFAKRFADVAKV 803
           G++EK++AA R  I  +I+PE N  D +E+P+ +++ L +   K   +V ++
Sbjct: 713 GLKEKLLAAHRGGIKTVIIPEENVRDLKEIPENIKQDLQIKPVKWIDEVLQI 764