Pairwise Alignments

Query, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

Subject, 197 a.a., RNA polymerase sigma factor RpoE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  185 bits (470), Expect = 4e-52
 Identities = 96/192 (50%), Positives = 129/192 (67%), Gaps = 13/192 (6%)

Query: 10  LVERVQRGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGDS 69
           LV+R   G++RAF++LV+KYQ ++  LI R V DT   QD+AQE FI+AYRAL  FRGD+
Sbjct: 2   LVQRTLAGEQRAFEMLVVKYQRRVERLIGRMVRDTDLVQDIAQETFIRAYRALAQFRGDA 61

Query: 70  AFYTWLYRIAINTAKNYLVSRGRRP----------PDSDVSSEDAEFYDGDHGLKDLESP 119
            FYTWLYRIA+NTAK  L+   R P           D + S  + E    + G+ D E+P
Sbjct: 62  QFYTWLYRIAVNTAKKQLMELKRDPLVFQSQMKSGEDDETSGPEREL---NSGVADTETP 118

Query: 120 ERSLLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAR 179
           E  L   EI   V+  +  LPE+LR A+TLRE +G+SYE+IA+ ++CP+GTVRSRIFRAR
Sbjct: 119 EAVLASKEIAEAVNAAMDALPEELRMAITLREIEGMSYEEIATALECPIGTVRSRIFRAR 178

Query: 180 EAIDKALQPLLQ 191
           EAI   ++P+L+
Sbjct: 179 EAISGRIKPMLE 190